LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012579
hsa-miR-34c-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026166
Biotype: transcript isomorph
Gene id: XLOC_012579
Gene Name: XLOC_012579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2222-2239
0.033
Not Conserved
EMX2OS
hsa-miR-34c-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4709-4728
0.011
1
8mer
953-978
0.008
0
9mer
4880-4897
0.003
0
7mer
6445-6471
0.003
0
6mer
5732-5752
0.002
1
8mer
2597-2620
0.001
0
6mer
1777-1792
0.001
1
6mer
1594-1618
0.001
0
6mer
2622-2644
0.001
0
6mer
1443-1465
0.001
0
6mer
2530-2546
0.001
1
6mer
2526-2544
0.000
1
6mer
1773-1792
0.000
1
XLOC_008374
hsa-miR-34c-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017700
Biotype: transcript isomorph
Gene id: XLOC_008374
Gene Name: XLOC_008374
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2939-2962
0.018
0
7mer
59-78
0.011
1
6mer
2288-2296
0.005
5
RP6-102O10.1
hsa-miR-34c-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422038
Biotype: lincRNA
Gene id: ENSG00000227935
Gene Name: RP6-102O10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
686-704
0.016
3
7mer
450-467
0.012
0
6mer
140-166
0.006
3
IQCH-AS1
hsa-miR-34c-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561232
Biotype: lincRNA
Gene id: ENSG00000259673
Gene Name: IQCH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-249
0.012
1
7mer
1173-1187
0.006
0
6mer
4349-4376
0.004
8
6mer
651-675
0.003
1
6mer
127-141
0.003
1
6mer
5230-5243
0.003
1
6mer
2298-2309
0.001
0
XLOC_003235
hsa-miR-34c-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
546-560
0.010
0
8mer
5738-5764
0.007
1
7mer
2400-2424
0.006
1
6mer
6434-6448
0.006
1
6mer
1469-1489
0.002
1
6mer
3979-3996
0.001
0
6mer
5162-5180
0.001
1
XLOC_012592
hsa-miR-34c-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025784
Biotype: transcript isomorph
Gene id: XLOC_012592
Gene Name: XLOC_012592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-200
0.017
1
7mer
1282-1295
0.004
1
6mer
114-133
0.004
0
6mer
1846-1866
0.003
3
6mer
1736-1758
0.003
2
6mer
1618-1640
0.002
1
XLOC_004364
hsa-miR-34c-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010677
Biotype: transcript isomorph
Gene id: XLOC_004364
Gene Name: XLOC_004364
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
269-285
0.017
0
6mer
265-281
0.016
0
RP3-461P17.10
hsa-miR-34c-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000595203
Biotype: lincRNA
Gene id: ENSG00000269549
Gene Name: RP3-461P17.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2658-2679
0.025
1
6mer
2435-2458
0.003
1
6mer
2810-2835
0.003
1
6mer
1887-1903
0.002
1
6mer
1471-1496
0.001
1
RP11-92B11.3
hsa-miR-34c-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-531
0.019
0
6mer
72-94
0.014
0
RP11-874J12.4
hsa-miR-34c-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577848
Biotype: antisense
Gene id: ENSG00000266401
Gene Name: RP11-874J12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1160-1176
0.010
2
7mer
171-194
0.008
2
6mer
420-443
0.006
4
8mer
741-759
0.006
0
6mer
666-689
0.003
1
XLOC_005302
hsa-miR-34c-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011819
Biotype: transcript isomorph
Gene id: XLOC_005302
Gene Name: XLOC_005302
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4620-4645
0.022
8
6mer
605-627
0.003
1
6mer
395-407
0.003
0
6mer
2777-2792
0.002
3
6mer
3726-3743
0.002
0
6mer
1143-1165
0.001
0
6mer
3749-3776
0.001
1
CTD-3051D23.1
hsa-miR-34c-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556430
Biotype: lincRNA
Gene id: ENSG00000258811
Gene Name: CTD-3051D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-448
0.021
1
6mer
2164-2186
0.005
1
6mer
1441-1456
0.003
1
6mer
1890-1909
0.002
1
6mer
1745-1771
0.001
0
6mer
1240-1261
0.001
Not Conserved
LOC100506639
hsa-miR-34c-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
770-779
0.017
1
6mer
167-191
0.016
1
RP11-368I23.4
hsa-miR-34c-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609103
Biotype: lincRNA
Gene id: ENSG00000273177
Gene Name: RP11-368I23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-256
0.033
2
MANEA-AS1
hsa-miR-34c-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_104136.1
Biotype: lincRNA
Gene id: NR_104136.1 (gene)
Gene Name: MANEA-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-350
0.033
0
CTC-487M23.5
hsa-miR-34c-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602872
Biotype: antisense
Gene id: ENSG00000270067
Gene Name: CTC-487M23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-157
0.033
1
LINC00506
hsa-miR-34c-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3971-3994
0.011
0
6mer
4074-4089
0.008
1
6mer
1070-1085
0.004
0
6mer
3169-3185
0.003
0
6mer
3389-3410
0.003
0
6mer
1644-1671
0.002
0
6mer
2373-2392
0.002
0
CTD-2547G23.4
hsa-miR-34c-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612792
Biotype: lincRNA
Gene id: ENSG00000274925
Gene Name: CTD-2547G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3039-3065
0.027
0
6mer
2649-2670
0.004
0
6mer
2769-2785
0.002
0
CTA-929C8.9
hsa-miR-34c-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3530-3548
0.008
0
8mer
24743-24764
0.007
0
8mer
19865-19875
0.005
Not Conserved
6mer
192-211
0.003
1
6mer
2303-2317
0.002
1
6mer
21543-21560
0.002
1
6mer
10117-10137
0.002
1
6mer
17716-17738
0.001
0
6mer
16148-16157
0.001
0
7mer
20108-20129
0.001
0
6mer
15139-15161
0.001
1
6mer
15108-15135
0.001
Not Conserved
6mer
19985-20009
0.000
Not Conserved
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