LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
853-870
0.012
1
6mer
471-492
0.011
1
6mer
879-904
0.006
0
6mer
445-471
0.005
0
RP11-442N24__B.1
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427804
Biotype: lincRNA
Gene id: ENSG00000229388
Gene Name: RP11-442N24__B.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-680
0.034
4
RP11-93B14.6
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370520
Biotype: antisense
Gene id: ENSG00000167046
Gene Name: RP11-93B14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-496
0.026
0
7mer
403-420
0.006
1
6mer
1869-1891
0.003
0
XLOC_011474
hsa-miR-34c-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023676
Biotype: transcript isomorph
Gene id: XLOC_011474
Gene Name: XLOC_011474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-268
0.034
1
RP11-57A19.5
hsa-miR-34c-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
290-305
0.017
0
6mer
229-255
0.017
0
XLOC_003691
hsa-miR-34c-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008254
Biotype: transcript isomorph
Gene id: XLOC_003691
Gene Name: XLOC_003691
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-236
0.028
0
6mer
122-142
0.006
0
LOC100288069
hsa-miR-34c-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033908.1
Biotype: lincRNA
Gene id: NR_033908.1 (gene)
Gene Name: LOC100288069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
169-195
0.015
1
6mer
195-216
0.014
1
6mer
818-837
0.004
0
CTC-499B15.7
hsa-miR-34c-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1797-1818
0.034
1
XLOC_011217
hsa-miR-34c-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023919
Biotype: transcript isomorph
Gene id: XLOC_011217
Gene Name: XLOC_011217
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1837-1857
0.019
1
7mer
1228-1248
0.012
3
6mer
713-727
0.003
3
CTD-2292M16.8
hsa-miR-34c-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556738
Biotype: lincRNA
Gene id: ENSG00000258768
Gene Name: CTD-2292M16.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2825-2840
0.013
1
7mer
3440-3464
0.011
0
7mer
1797-1818
0.007
3
6mer
535-555
0.003
1
FMR1-AS1
hsa-miR-34c-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-20
0.019
2
6mer
341-359
0.005
3
6mer
1561-1579
0.004
1
8mer
2244-2264
0.003
0
6mer
1422-1436
0.002
1
SRD5A3-AS1
hsa-miR-34c-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595103
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-651
0.034
1
LINC00707
hsa-miR-34c-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436383
Biotype: lincRNA
Gene id: ENSG00000238266
Gene Name: LINC00707
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2736-2759
0.018
0
7mer
22-41
0.011
1
6mer
2085-2093
0.005
5
RP11-476D10.1
hsa-miR-34c-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000563933
Biotype: lincRNA
Gene id: ENSG00000260943
Gene Name: RP11-476D10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1163-1185
0.018
4
6mer
1602-1627
0.013
4
6mer
1085-1102
0.003
1
RP11-267L5.1
hsa-miR-34c-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521523
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-476
0.025
Not Conserved
6mer
734-758
0.009
3
CKMT2-AS1
hsa-miR-34c-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512287
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-54
0.027
1
6mer
212-226
0.006
4
LINC01284
hsa-miR-34c-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000442994
Biotype: lincRNA
Gene id: ENSG00000230317
Gene Name: LINC01284
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-193
0.016
1
6mer
413-431
0.006
1
6mer
47-67
0.006
1
6mer
202-223
0.005
1
LINC01153
hsa-miR-34c-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429809
Biotype: lincRNA
Gene id: ENSG00000227143
Gene Name: LINC01153
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-90
0.031
1
6mer
1818-1842
0.002
1
XLOC_003657
hsa-miR-34c-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008203
Biotype: transcript isomorph
Gene id: XLOC_003657
Gene Name: XLOC_003657
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-609
0.029
Not Conserved
6mer
962-980
0.005
0
FAM230B
hsa-miR-34c-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424410
Biotype: lincRNA
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-590
0.029
0
6mer
356-373
0.003
Not Conserved
6mer
1619-1643
0.002
Not Conserved
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