LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
TUSC7
hsa-miR-34c-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477539
Biotype: antisense
Gene id: ENSG00000243197
Gene Name: TUSC7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1709-1735
0.030
0
6mer
170-191
0.005
2
LL22NC03-22D1.1
hsa-miR-34c-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13746-13767
0.006
0
6mer
28569-28587
0.003
0
7mer
20170-20182
0.003
0
7mer
23369-23394
0.002
1
7mer
10071-10093
0.002
Not Conserved
6mer
17914-17935
0.002
2
6mer
974-990
0.002
1
6mer
10630-10654
0.002
1
6mer
5878-5897
0.001
0
6mer
9838-9860
0.001
0
6mer
11078-11097
0.001
0
6mer
18272-18287
0.001
0
6mer
6271-6292
0.001
1
6mer
16257-16281
0.001
0
6mer
24627-24653
0.001
0
6mer
26609-26633
0.001
1
6mer
23054-23075
0.001
1
6mer
12581-12605
0.001
0
6mer
16014-16031
0.001
Not Conserved
CH17-437K3.1
hsa-miR-34c-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417218
Biotype: lincRNA
Gene id: ENSG00000227082
Gene Name: CH17-437K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3310-3337
0.015
1
7mer
3081-3107
0.015
0
7mer
1039-1057
0.004
1
XLOC_012601
hsa-miR-34c-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026226
Biotype: transcript isomorph
Gene id: XLOC_012601
Gene Name: XLOC_012601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-235
0.029
1
6mer
51-72
0.006
1
EAF1-AS1
hsa-miR-34c-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494875
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-91
0.034
10
RP11-316M21.6
hsa-miR-34c-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444359
Biotype: antisense
Gene id: ENSG00000227492
Gene Name: RP11-316M21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
647-673
0.027
6
7mer
217-240
0.004
1
6mer
359-376
0.002
0
6mer
346-372
0.002
0
PTPRD-AS1
hsa-miR-34c-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430766
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1747-1760
0.017
4
8mer
1723-1739
0.014
1
6mer
71-85
0.004
0
FLJ16779
hsa-miR-34c-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612722
Biotype: antisense
Gene id: ENSG00000275620
Gene Name: FLJ16779
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6837-6862
0.013
0
7mer
7324-7343
0.007
0
8mer
4241-4263
0.004
0
6mer
2677-2701
0.002
0
6mer
4496-4522
0.001
1
7mer
1110-1126
0.001
0
6mer
6502-6524
0.001
1
6mer
2199-2216
0.001
1
6mer
1446-1467
0.001
1
6mer
5141-5162
0.001
1
6mer
6041-6067
0.001
Not Conserved
6mer
1132-1143
0.001
0
6mer
2235-2258
0.001
1
CTB-92J24.3
hsa-miR-34c-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596326
Biotype: antisense
Gene id: ENSG00000269289
Gene Name: CTB-92J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-743
0.019
0
7mer
343-359
0.015
1
RP11-554D14.7
hsa-miR-34c-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552154
Biotype: lincRNA
Gene id: ENSG00000257141
Gene Name: RP11-554D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
119-133
0.020
0
6mer
107-130
0.014
0
RP11-206L10.2
hsa-miR-34c-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428504
Biotype: lincRNA
Gene id: ENSG00000228327
Gene Name: RP11-206L10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
177-203
0.015
1
6mer
203-224
0.014
1
6mer
826-845
0.005
0
XLOC_000480
hsa-miR-34c-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000344
Biotype: transcript isomorph
Gene id: XLOC_000480
Gene Name: XLOC_000480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-118
0.022
0
6mer
50-64
0.007
1
6mer
17-38
0.005
1
XLOC_012683
hsa-miR-34c-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026336
Biotype: transcript isomorph
Gene id: XLOC_012683
Gene Name: XLOC_012683
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1205
0.021
2
7mer
961-979
0.008
2
7mer
1240-1264
0.005
0
XLOC_006390
hsa-miR-34c-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
626-646
0.010
10
6mer
4498-4511
0.006
4
7mer
4147-4161
0.003
2
6mer
1647-1672
0.002
9
6mer
4386-4409
0.002
1
6mer
1289-1296
0.002
4
6mer
4375-4390
0.002
2
6mer
1744-1766
0.002
5
6mer
3582-3605
0.001
1
7mer
2112-2132
0.001
2
6mer
3457-3480
0.001
2
6mer
2385-2402
0.001
2
6mer
1221-1237
0.001
1
6mer
3398-3419
0.001
2
LHFPL3-AS1
hsa-miR-34c-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434579
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-265
0.016
1
6mer
42-57
0.011
6
6mer
98-114
0.005
1
6mer
997-1020
0.002
0
AF131216.6
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3808-3826
0.018
1
7mer
564-578
0.007
0
7mer
5120-5147
0.005
Not Conserved
8mer
2454-2477
0.003
1
6mer
4778-4800
0.001
1
AC096669.3
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439893
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-111
0.034
1
SRD5A3-AS1
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609487
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
695-713
0.034
1
RP11-840I19.3
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555898
Biotype: antisense
Gene id: ENSG00000259118
Gene Name: RP11-840I19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-194
0.034
2
XLOC_010255
hsa-miR-34c-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020990
Biotype: transcript isomorph
Gene id: XLOC_010255
Gene Name: XLOC_010255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-69
0.021
1
6mer
244-258
0.008
1
6mer
470-487
0.005
1
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