LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34c-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_010128
hsa-miR-34c-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020842
Biotype: transcript isomorph
Gene id: XLOC_010128
Gene Name: XLOC_010128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2056-2078
0.013
0
7mer
2201-2217
0.010
2
6mer
477-485
0.005
0
6mer
1897-1923
0.003
Not Conserved
6mer
2032-2049
0.003
0
6mer
2133-2156
0.002
1
RP11-958J22.1
hsa-miR-34c-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529127
Biotype: retained_intron
Gene id: ENSG00000254746
Gene Name: RP11-958J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-51
0.027
2
6mer
734-749
0.004
1
6mer
368-386
0.003
0
6mer
482-502
0.002
1
XLOC_008878
hsa-miR-34c-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1816-1840
0.014
0
6mer
1182-1204
0.012
0
6mer
1261-1285
0.010
0
C21orf90
hsa-miR-34c-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330490
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
758-781
0.035
1
LINC01005
hsa-miR-34c-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441691
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
334-352
0.015
1
6mer
410-434
0.015
1
6mer
323-349
0.005
0
RP11-267L5.1
hsa-miR-34c-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520543
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-436
0.027
Not Conserved
6mer
713-737
0.008
3
LINC01001
hsa-miR-34c-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
111-128
0.005
0
7mer
2062-2088
0.004
0
6mer
79-96
0.003
0
6mer
594-610
0.003
0
6mer
1998-2021
0.003
0
6mer
663-679
0.002
0
6mer
218-236
0.002
Not Conserved
6mer
302-321
0.002
Not Conserved
6mer
808-827
0.001
0
7mer
1483-1510
0.001
Not Conserved
6mer
1646-1672
0.001
Not Conserved
6mer
998-1014
0.001
Not Conserved
6mer
1871-1887
0.001
Not Conserved
6mer
843-866
0.001
Not Conserved
6mer
1097-1122
0.001
Not Conserved
6mer
1839-1866
0.001
Not Conserved
6mer
695-713
0.001
Not Conserved
6mer
907-933
0.001
Not Conserved
6mer
1325-1352
0.001
Not Conserved
6mer
1093-1113
0.001
Not Conserved
6mer
1420-1436
0.000
Not Conserved
6mer
1388-1415
0.000
Not Conserved
AC010127.3
hsa-miR-34c-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599041
Biotype: antisense
Gene id: ENSG00000236107
Gene Name: AC010127.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-168
0.027
1
6mer
556-583
0.005
1
6mer
346-366
0.003
0
RP11-543D5.1
hsa-miR-34c-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454285
Biotype: lincRNA
Gene id: ENSG00000227947
Gene Name: RP11-543D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
635-651
0.030
3
6mer
786-801
0.005
2
XLOC_006130
hsa-miR-34c-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013484
Biotype: transcript isomorph
Gene id: XLOC_006130
Gene Name: XLOC_006130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
150-170
0.018
1
6mer
18-38
0.017
1
FMR1-AS1
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000596112
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-20
0.019
2
6mer
341-359
0.005
3
6mer
1561-1582
0.004
1
6mer
1422-1436
0.004
1
8mer
1702-1722
0.003
0
XLOC_006850
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014769
Biotype: transcript isomorph
Gene id: XLOC_006850
Gene Name: XLOC_006850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1194-1209
0.035
7
LINC01138
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000613452
Biotype: lincRNA
Gene id: ENSG00000274020
Gene Name: LINC01138
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
904-924
0.014
8
POU6F2-AS1
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433519
Biotype: antisense
Gene id: ENSG00000224122
Gene Name: POU6F2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-149
0.031
2
6mer
150-164
0.003
2
FMR1-AS1
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000594922
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-20
0.020
2
6mer
341-359
0.005
3
6mer
1561-1578
0.004
1
8mer
1862-1882
0.003
0
6mer
1422-1436
0.003
1
LINC00900
hsa-miR-34c-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499809
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3143-3160
0.022
3
6mer
138-161
0.005
0
6mer
655-676
0.003
1
6mer
2423-2447
0.002
1
6mer
522-537
0.001
0
6mer
526-549
0.001
0
RP11-267L5.1
hsa-miR-34c-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523682
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-440
0.026
Not Conserved
6mer
698-722
0.009
3
LINC01010
hsa-miR-34c-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038218.1
Biotype: lincRNA
Gene id: NR_038218.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1267-1291
0.018
9
7mer
89-104
0.009
1
6mer
89-113
0.006
3
6mer
669-692
0.003
3
RP11-723O4.9
hsa-miR-34c-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567253
Biotype: lincRNA
Gene id: ENSG00000261159
Gene Name: RP11-723O4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-190
0.030
1
6mer
511-531
0.004
1
LINC01111
hsa-miR-34c-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518732
Biotype: lincRNA
Gene id: ENSG00000254300
Gene Name: LINC01111
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1106-1121
0.035
7
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept