LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006253
hsa-miR-34c-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013599
Biotype: transcript isomorph
Gene id: XLOC_006253
Gene Name: XLOC_006253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4704-4719
0.009
1
7mer
3259-3279
0.006
1
7mer
2506-2525
0.005
2
7mer
1115-1136
0.004
3
6mer
582-600
0.003
1
6mer
2845-2867
0.003
2
6mer
791-813
0.003
1
6mer
3451-3473
0.002
1
6mer
1394-1418
0.001
1
6mer
3799-3821
0.001
Not Conserved
6mer
1130-1142
0.001
1
XLOC_004211
hsa-miR-34c-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008697
Biotype: transcript isomorph
Gene id: XLOC_004211
Gene Name: XLOC_004211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-396
0.021
4
7mer
39-61
0.010
2
6mer
531-554
0.005
3
AC093382.1
hsa-miR-34c-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413311
Biotype: lincRNA
Gene id: ENSG00000226276
Gene Name: AC093382.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-201
0.019
Not Conserved
6mer
211-230
0.011
3
6mer
272-294
0.006
0
RP11-989E6.10
hsa-miR-34c-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3858-3874
0.006
0
7mer
2078-2097
0.006
0
6mer
3436-3454
0.004
0
6mer
1000-1015
0.004
0
6mer
762-779
0.004
0
6mer
3115-3137
0.004
0
6mer
1269-1284
0.003
0
6mer
1685-1709
0.002
0
6mer
1903-1924
0.001
0
6mer
2002-2012
0.001
0
6mer
1679-1695
0.000
Not Conserved
CTA-414D7.1
hsa-miR-34c-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2053-2077
0.007
0
6mer
282-301
0.003
1
6mer
8200-8217
0.002
1
6mer
929-940
0.002
0
6mer
7652-7670
0.002
0
6mer
8622-8645
0.002
1
6mer
6419-6439
0.002
2
6mer
1266-1281
0.001
1
6mer
3847-3866
0.001
0
7mer
1923-1941
0.001
1
6mer
1905-1922
0.001
0
6mer
2747-2769
0.001
1
6mer
6840-6866
0.001
0
6mer
1025-1040
0.001
1
6mer
3118-3139
0.001
1
6mer
3963-3977
0.001
1
6mer
8770-8783
0.001
1
6mer
9679-9699
0.001
1
6mer
3271-3297
0.001
1
6mer
7883-7910
0.001
1
7mer
8797-8822
0.001
0
6mer
5314-5341
0.001
0
6mer
5157-5184
0.001
0
6mer
7914-7936
0.001
1
6mer
3143-3165
0.000
1
6mer
5188-5210
0.000
0
6mer
5326-5345
0.000
0
RP11-459F6.1
hsa-miR-34c-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561923
Biotype: antisense
Gene id: ENSG00000260867
Gene Name: RP11-459F6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-97
0.031
1
6mer
66-86
0.005
1
LINC00965
hsa-miR-34c-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027000.1
Biotype: lincRNA
Gene id: NR_027000.1 (gene)
Gene Name: LINC00965
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2744-2770
0.027
0
6mer
2756-2773
0.005
Not Conserved
6mer
307-333
0.004
Not Conserved
XLOC_010768
hsa-miR-34c-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022925
Biotype: transcript isomorph
Gene id: XLOC_010768
Gene Name: XLOC_010768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-118
0.036
0
RP11-526F3.1
hsa-miR-34c-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504004
Biotype: antisense
Gene id: ENSG00000251076
Gene Name: RP11-526F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-589
0.036
4
FLJ32255
hsa-miR-34c-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
500-525
0.022
1
7mer
269-289
0.014
0
RP11-504P24.8
hsa-miR-34c-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
770-796
0.007
1
6mer
416-435
0.005
1
6mer
202-219
0.004
0
6mer
271-287
0.004
0
6mer
547-574
0.003
0
7mer
170-187
0.003
0
6mer
303-321
0.003
0
6mer
515-541
0.002
0
6mer
706-729
0.002
0
6mer
451-474
0.002
Not Conserved
RP11-374M1.2
hsa-miR-34c-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
726-743
0.025
1
7mer
573-591
0.011
0
NAV2-AS5
hsa-miR-34c-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-265
0.026
4
6mer
52-78
0.006
3
6mer
2111-2128
0.002
1
6mer
2427-2441
0.001
1
RP11-231I16.1
hsa-miR-34c-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548738
Biotype: antisense
Gene id: ENSG00000257279
Gene Name: RP11-231I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3963-3980
0.029
4
7mer
3957-3980
0.005
0
6mer
3390-3410
0.001
0
CTD-3105H18.13
hsa-miR-34c-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-29
0.036
Not Conserved
XLOC_009323
hsa-miR-34c-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3015-3037
0.023
2
6mer
153-166
0.011
9
6mer
1599-1620
0.001
0
RP11-118G23.2
hsa-miR-34c-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577546
Biotype: lincRNA
Gene id: ENSG00000264643
Gene Name: RP11-118G23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-32
0.033
1
6mer
184-203
0.002
1
LINC00260
hsa-miR-34c-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046213.1
Biotype: sense
Gene id: NR_046213.1 (gene)
Gene Name: LINC00260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-150
0.031
0
6mer
729-749
0.005
1
LCMT1-AS2
hsa-miR-34c-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4161-4177
0.011
1
6mer
1537-1548
0.008
1
6mer
1919-1937
0.006
1
6mer
5630-5642
0.005
0
7mer
1738-1754
0.005
0
LINC00998
hsa-miR-34c-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000397764
Biotype: lincRNA
Gene id: ENSG00000214194
Gene Name: LINC00998
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-331
0.030
5
6mer
803-826
0.006
4
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