LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34c-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-710F7.2
hsa-miR-34c-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512514
Biotype: antisense
Gene id: ENSG00000250740
Gene Name: RP11-710F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-417
0.037
8
RP11-472N19.3
hsa-miR-34c-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553537
Biotype: lincRNA
Gene id: ENSG00000258481
Gene Name: RP11-472N19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-111
0.031
1
6mer
526-547
0.006
2
RP5-1014D13.2
hsa-miR-34c-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11595-11612
0.007
5
7mer
5141-5166
0.002
0
8mer+mismatch
17045-17066
0.001
5
6mer
17294-17311
0.001
1
6mer
8549-8574
0.001
1
6mer
4655-4667
0.001
1
6mer
18215-18237
0.001
1
6mer
13530-13553
0.001
0
6mer
13142-13159
0.001
0
6mer
3550-3576
0.001
Not Conserved
6mer
11109-11122
0.001
0
6mer
13362-13388
0.001
1
6mer
12694-12707
0.001
1
6mer
18355-18368
0.001
1
6mer
12821-12841
0.001
0
6mer
2889-2911
0.001
0
6mer
14886-14902
0.001
0
6mer
12995-13017
0.001
1
6mer
4058-4080
0.001
0
6mer
14444-14460
0.001
0
6mer
14241-14267
0.001
1
6mer
9008-9033
0.001
1
6mer
18355-18372
0.001
1
6mer
2409-2431
0.001
Not Conserved
6mer
10849-10870
0.001
0
6mer
16272-16296
0.001
0
6mer
5324-5350
0.001
0
6mer
13619-13641
0.001
1
6mer
15067-15080
0.001
1
6mer
17370-17383
0.001
1
6mer
14578-14591
0.000
0
6mer
3715-3741
0.000
0
6mer
5354-5376
0.000
0
6mer
14923-14947
0.000
0
6mer
15067-15084
0.000
1
6mer
14578-14595
0.000
0
RP11-25I15.3
hsa-miR-34c-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550177
Biotype: lincRNA
Gene id: ENSG00000257114
Gene Name: RP11-25I15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-505
0.035
3
6mer
584-601
0.002
2
RP4-697P8.3
hsa-miR-34c-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448859
Biotype: lincRNA
Gene id: ENSG00000232900
Gene Name: RP4-697P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1933-1958
0.037
0
LINC00938
hsa-miR-34c-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3820-3845
0.019
3
9mer
5223-5239
0.012
1
6mer
814-829
0.003
3
6mer
1199-1224
0.001
1
6mer
2041-2063
0.001
1
6mer
3783-3804
0.000
0
RP4-809F18.2
hsa-miR-34c-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539588
Biotype: lincRNA
Gene id: ENSG00000257061
Gene Name: RP4-809F18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-121
0.037
4
RP1-125I3.2
hsa-miR-34c-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455431
Biotype: antisense
Gene id: ENSG00000236528
Gene Name: RP1-125I3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
790-814
0.037
9
XLOC_006460
hsa-miR-34c-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
372-390
0.019
1
7mer
318-333
0.018
1
SRD5A3-AS1
hsa-miR-34c-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595734
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
803-821
0.032
1
6mer
670-692
0.003
1
6mer
696-723
0.002
1
RP11-15H20.6
hsa-miR-34c-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598386
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-147
0.021
1
6mer
252-278
0.015
1
XLOC_006459
hsa-miR-34c-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
507-524
0.016
1
6mer
1541-1557
0.009
0
6mer
1021-1033
0.004
0
6mer
318-336
0.004
0
6mer
377-396
0.004
0
LINC00998
hsa-miR-34c-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015442.1
Biotype: lincRNA
Gene id: NR_015442.1 (gene)
Gene Name: LINC00998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-331
0.031
5
6mer
803-826
0.006
4
XLOC_012006
hsa-miR-34c-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-377
0.037
0
RP11-331F9.3
hsa-miR-34c-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457044
Biotype: antisense
Gene id: ENSG00000231393
Gene Name: RP11-331F9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-492
0.037
1
XLOC_005559
hsa-miR-34c-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012631
Biotype: transcript isomorph
Gene id: XLOC_005559
Gene Name: XLOC_005559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-606
0.014
2
9mer
2985-3007
0.005
0
6mer
217-241
0.004
1
6mer
2858-2880
0.003
1
6mer
3470-3497
0.003
1
6mer
1166-1181
0.002
1
6mer
3757-3777
0.002
Not Conserved
6mer
2544-2565
0.001
1
6mer
1681-1703
0.001
1
8mer
2603-2621
0.001
0
6mer
1746-1757
0.000
0
XLOC_010385
hsa-miR-34c-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021787
Biotype: transcript isomorph
Gene id: XLOC_010385
Gene Name: XLOC_010385
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-78
0.036
0
RP11-374M1.2
hsa-miR-34c-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-624
0.025
1
7mer
454-472
0.011
0
XLOC_006625
hsa-miR-34c-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013982
Biotype: transcript isomorph
Gene id: XLOC_006625
Gene Name: XLOC_006625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-227
0.027
0
7mer
1126-1151
0.010
1
XLOC_007528
hsa-miR-34c-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-151
0.015
3
8mer
4180-4201
0.009
3
6mer
4123-4146
0.002
2
6mer
900-925
0.002
0
6mer
661-683
0.002
1
6mer
3121-3140
0.002
1
6mer
3354-3378
0.001
0
6mer
2450-2475
0.001
Not Conserved
6mer
3461-3482
0.001
1
6mer
2606-2632
0.001
1
6mer
2619-2636
0.000
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept