LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-403B2.5
hsa-miR-34c-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560839
Biotype: lincRNA
Gene id: ENSG00000259443
Gene Name: RP11-403B2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
970-997
0.015
0
6mer
799-824
0.014
0
6mer
696-721
0.010
0
RP11-440L14.1
hsa-miR-34c-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503571
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-97
0.039
1
AC011343.1
hsa-miR-34c-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4590-4615
0.015
1
9mer
17-32
0.013
Not Conserved
6mer
143-161
0.004
1
6mer
2519-2546
0.003
3
6mer
1356-1382
0.002
4
6mer
3257-3282
0.001
Not Conserved
LINC01221
hsa-miR-34c-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432488
Biotype: lincRNA
Gene id: ENSG00000235492
Gene Name: LINC01221
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-56
0.039
0
XLOC_008678
hsa-miR-34c-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018395
Biotype: transcript isomorph
Gene id: XLOC_008678
Gene Name: XLOC_008678
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-137
0.023
0
6mer
412-432
0.015
0
SEPT5-GP1BB
hsa-miR-34c-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-140
0.030
5
6mer
499-518
0.006
8
6mer
2504-2529
0.002
5
RP11-219D15.3
hsa-miR-34c-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608472
Biotype: antisense
Gene id: ENSG00000272656
Gene Name: RP11-219D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-325
0.038
0
MANEA-AS1
hsa-miR-34c-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564541
Biotype: antisense
Gene id: ENSG00000261366
Gene Name: MANEA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2106-2124
0.038
0
XLOC_006734
hsa-miR-34c-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014463
Biotype: transcript isomorph
Gene id: XLOC_006734
Gene Name: XLOC_006734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2785-2802
0.010
1
9mer
1501-1523
0.010
0
7mer
653-669
0.009
1
8mer
2289-2311
0.005
1
6mer
3350-3373
0.004
0
6mer
1747-1763
0.001
1
XLOC_008075
hsa-miR-34c-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
81-105
0.019
0
6mer
303-320
0.019
0
LINC01490
hsa-miR-34c-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548705
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-485
0.038
1
XLOC_003264
hsa-miR-34c-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006668
Biotype: transcript isomorph
Gene id: XLOC_003264
Gene Name: XLOC_003264
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-669
0.038
0
IQCH-AS1
hsa-miR-34c-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559298
Biotype: lincRNA
Gene id: ENSG00000259673
Gene Name: IQCH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-249
0.012
1
7mer
1173-1187
0.006
0
6mer
4349-4376
0.004
8
7mer
5083-5105
0.004
1
6mer
651-675
0.004
1
6mer
5434-5447
0.003
1
6mer
127-141
0.003
1
6mer
2298-2309
0.001
0
CTD-3049M7.1
hsa-miR-34c-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556447
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-64
0.027
1
6mer
200-219
0.006
1
6mer
636-657
0.005
5
CTA-292E10.9
hsa-miR-34c-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1841-1862
0.007
7
6mer
23859-23876
0.003
2
6mer
3878-3887
0.002
7
6mer
8972-8991
0.002
2
6mer
8079-8101
0.002
1
6mer
24066-24086
0.002
1
6mer
1212-1237
0.002
1
6mer
7326-7347
0.001
2
6mer
21871-21885
0.001
1
6mer
24198-24220
0.001
1
6mer
3967-3992
0.001
2
7mer
5747-5769
0.001
0
6mer
17129-17151
0.001
0
6mer
17422-17437
0.001
2
6mer
19785-19806
0.001
0
6mer
2873-2895
0.001
1
6mer
1047-1074
0.001
1
6mer
9347-9367
0.001
0
6mer
23187-23208
0.001
1
6mer
22185-22212
0.001
0
6mer
5533-5558
0.001
1
6mer
6149-6175
0.001
0
6mer
8692-8718
0.001
0
6mer
6184-6201
0.000
1
6mer
23220-23234
0.000
1
XLOC_004836
hsa-miR-34c-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010348
Biotype: transcript isomorph
Gene id: XLOC_004836
Gene Name: XLOC_004836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1297-1314
0.018
0
8mer
1220-1239
0.014
0
6mer
1622-1642
0.004
0
6mer
1518-1537
0.003
0
AC079586.1
hsa-miR-34c-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2100-2115
0.027
1
6mer
2108-2134
0.004
1
6mer
613-638
0.003
1
6mer
961-987
0.002
1
6mer
534-547
0.002
0
LINC01366
hsa-miR-34c-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436248
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-412
0.026
0
8mer
751-777
0.012
0
XLOC_009577
hsa-miR-34c-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019778
Biotype: transcript isomorph
Gene id: XLOC_009577
Gene Name: XLOC_009577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5061-5079
0.008
2
8mer
1387-1413
0.006
1
6mer
6770-6796
0.004
6
6mer
7244-7267
0.004
1
6mer
295-318
0.003
1
7mer
6715-6741
0.003
1
7mer
4826-4844
0.002
1
6mer
5925-5946
0.002
1
6mer
5327-5351
0.001
1
7mer
1301-1317
0.001
1
6mer
1178-1204
0.001
1
6mer
2951-2972
0.001
0
6mer
4053-4079
0.001
0
6mer
2875-2895
0.001
1
6mer
5882-5906
0.001
1
LA16c-306A4.1
hsa-miR-34c-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569106
Biotype: antisense
Gene id: ENSG00000260022
Gene Name: LA16c-306A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-97
0.037
1
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