Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p

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Filters

Gene
miRNA
Score
RNF219-AS1
hsa-miR-34c-5p
0.858

Gene Details
Chromosome: 13
Transcript: ENST00000560584
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
915-941
0.019
3
8mer
1793-1808
0.015
1
6mer
1652-1678
0.006
5
LINC01366
hsa-miR-34c-5p
0.858

Gene Details
Chromosome: 5
Transcript: ENST00000521471
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-395
0.027
0
8mer
734-760
0.013
0
LINC00667
hsa-miR-34c-5p
0.858

Gene Details
Chromosome: 18
Transcript: ENST00000582008
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3695-3713
0.019
0
7mer
578-600
0.007
1
7mer
594-619
0.005
1
6mer
297-315
0.003
1
6mer
2676-2701
0.002
0
6mer
2514-2533
0.002
1
6mer
1926-1949
0.002
1
RP11-383M4.2
hsa-miR-34c-5p
0.858

Gene Details
Chromosome: 9
Transcript: ENST00000427387
Biotype: lincRNA
Gene id: ENSG00000230846
Gene Name: RP11-383M4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
134-147
0.030
0
7mer
113-128
0.011
1
RP11-693J15.4
hsa-miR-34c-5p
0.857

Gene Details
Chromosome: 12
Transcript: ENST00000508671
Biotype: antisense
Gene id: ENSG00000266923
Gene Name: RP11-693J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-375
0.021
0
8mer
228-241
0.019
1
RP11-473M20.7
hsa-miR-34c-5p
0.857

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
256-271
0.004
1
6mer
3861-3886
0.003
1
6mer
3756-3782
0.003
1
6mer
3552-3577
0.002
1
6mer
3652-3677
0.002
0
7mer
1458-1477
0.002
1
6mer
3452-3478
0.002
1
6mer
1620-1645
0.002
1
6mer
3384-3410
0.002
1
6mer
3420-3446
0.002
1
6mer
960-986
0.002
1
6mer
3520-3546
0.002
0
6mer
3180-3206
0.001
0
6mer
4129-4155
0.001
Not Conserved
6mer
3316-3342
0.001
0
6mer
3352-3378
0.001
0
6mer
934-957
0.001
1
6mer
3284-3310
0.001
0
6mer
2142-2164
0.001
0
6mer
3144-3170
0.001
0
6mer
3036-3062
0.001
Not Conserved
6mer
1390-1413
0.001
2
6mer
1398-1413
0.001
1
6mer
2044-2068
0.001
0
RP11-96P7.1
hsa-miR-34c-5p
0.856

Gene Details
Chromosome: 16
Transcript: ENST00000512279
Biotype: lincRNA
Gene id: ENSG00000250514
Gene Name: RP11-96P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2136-2162
0.027
1
8mer
66-89
0.007
0
6mer
1020-1040
0.004
5
6mer
1181-1197
0.002
1
LINC00839
hsa-miR-34c-5p
0.855

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1634-1659
0.014
1
6mer
142-157
0.014
1
6mer
1770-1791
0.005
0
6mer
213-234
0.005
0
6mer
965-987
0.002
Not Conserved
LINC01010
hsa-miR-34c-5p
0.852

Gene Details
Chromosome: 6
Transcript: NR_038219.1
Biotype: lincRNA
Gene id: NR_038219.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1480-1504
0.015
9
7mer
89-104
0.008
1
7mer
189-207
0.007
1
6mer
89-113
0.005
3
6mer
882-905
0.003
3
6mer
413-426
0.002
1
LINC00900
hsa-miR-34c-5p
0.852

Gene Details
Chromosome: 11
Transcript: ENST00000501294
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-804
0.023
3
8mer
820-832
0.016
2
NEAT1
hsa-miR-34c-5p
0.851

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5972-5995
0.005
1
7mer
20776-20797
0.004
1
7mer
20931-20953
0.003
3
7mer
233-255
0.003
1
6mer
16135-16160
0.003
2
7mer
14940-14960
0.003
0
6mer
11699-11714
0.003
3
6mer
13879-13901
0.003
2
7mer
4336-4355
0.002
1
6mer
21150-21168
0.002
1
7mer
4449-4469
0.002
2
6mer
1694-1709
0.002
1
6mer
6462-6483
0.001
0
6mer
10335-10354
0.001
Not Conserved
6mer
15019-15032
0.001
1
6mer
13543-13559
0.001
2
6mer
7397-7413
0.001
0
6mer
7492-7503
0.001
1
6mer
13391-13414
0.000
Not Conserved
XLOC_008461
hsa-miR-34c-5p
0.851

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5847-5864
0.006
1
6mer
739-764
0.005
1
6mer
310-336
0.004
1
6mer
5631-5650
0.004
1
6mer
1157-1179
0.003
1
6mer
5879-5896
0.003
1
7mer
1961-1987
0.003
1
6mer
2954-2976
0.002
1
6mer
2536-2563
0.001
0
6mer
2377-2403
0.001
0
6mer
4756-4775
0.001
0
6mer
3295-3314
0.001
0
6mer
2165-2178
0.001
0
6mer
2694-2721
0.001
0
6mer
2028-2051
0.001
0
6mer
3061-3083
0.001
0
6mer
2183-2210
0.001
0
6mer
2610-2626
0.001
0
6mer
2631-2658
0.001
0
6mer
3186-3212
0.001
Not Conserved
6mer
2216-2242
0.000
0
6mer
3195-3216
0.000
Not Conserved
6mer
2990-3015
0.000
Not Conserved
RP4-656G21.1
hsa-miR-34c-5p
0.851

Gene Details
Chromosome: 1
Transcript: ENST00000422638
Biotype: lincRNA
Gene id: ENSG00000228176
Gene Name: RP4-656G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-378
0.036
0
6mer
38-55
0.003
1
RP11-384K6.6
hsa-miR-34c-5p
0.850

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4344-4363
0.005
1
6mer
247-273
0.005
1
7mer
1214-1240
0.004
1
6mer
3675-3691
0.003
0
6mer
4028-4045
0.002
0
6mer
3899-3918
0.002
Not Conserved
6mer
4218-4234
0.002
Not Conserved
6mer
3485-3511
0.001
Not Conserved
6mer
3739-3759
0.001
Not Conserved
6mer
2797-2814
0.001
Not Conserved
6mer
2287-2303
0.001
0
6mer
3110-3124
0.001
Not Conserved
6mer
2188-2208
0.001
Not Conserved
6mer
1415-1431
0.001
0
6mer
1281-1304
0.001
0
6mer
3328-3345
0.001
Not Conserved
6mer
1792-1819
0.001
Not Conserved
6mer
2439-2462
0.001
0
6mer
2623-2650
0.001
Not Conserved
6mer
1436-1463
0.001
0
6mer
1950-1977
0.001
0
6mer
2372-2398
0.001
0
6mer
3004-3027
0.001
Not Conserved
6mer
1867-1882
0.001
0
6mer
1887-1914
0.000
0
6mer
2862-2878
0.000
Not Conserved
6mer
2862-2882
0.000
Not Conserved
6mer
2886-2900
0.000
Not Conserved
6mer
3131-3156
0.000
Not Conserved
6mer
2469-2494
0.000
Not Conserved
6mer
1470-1495
0.000
Not Conserved
RP4-565E6.1
hsa-miR-34c-5p
0.850

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1498-1522
0.017
Not Conserved
8mer
1371-1386
0.013
3
6mer
2172-2188
0.003
1
7mer
942-964
0.003
0
6mer
462-481
0.002
1
RP11-80F22.15
hsa-miR-34c-5p
0.850

Gene Details
Chromosome: 16
Transcript: NR_034018.1
Biotype: lincRNA
Gene id: NR_034018.1 (gene)
Gene Name: RP11-80F22.15
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-297
0.022
0
6mer
117-138
0.017
0
LINC01128
hsa-miR-34c-5p
0.850

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6105-6126
0.017
1
6mer
215-242
0.005
1
8mer
3239-3261
0.004
0
6mer
5193-5208
0.003
0
6mer
4531-4544
0.002
1
6mer
4070-4091
0.002
1
6mer
1019-1038
0.002
Not Conserved
6mer
3649-3672
0.002
1
6mer
3372-3389
0.001
1
EMX2OS
hsa-miR-34c-5p
0.849

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4709-4728
0.012
1
8mer
953-978
0.008
0
7mer
6445-6471
0.003
0
9mer
4880-4897
0.003
0
6mer
6759-6777
0.002
1
6mer
6825-6850
0.002
0
6mer
5732-5752
0.002
1
8mer
2597-2620
0.001
0
6mer
1777-1792
0.001
1
6mer
1594-1618
0.001
0
6mer
2622-2644
0.001
0
6mer
1443-1465
0.001
0
6mer
2530-2546
0.001
1
6mer
2526-2544
0.000
1
6mer
1773-1792
0.000
1
RP11-80F22.15
hsa-miR-34c-5p
0.849

Gene Details
Chromosome: 16
Transcript: ENST00000562591
Biotype: lincRNA
Gene id: ENSG00000260857
Gene Name: RP11-80F22.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-291
0.021
0
6mer
111-132
0.017
0
XLOC_003067
hsa-miR-34c-5p
0.847

Gene Details
Chromosome: chr3
Transcript: TCONS_00006456
Biotype: transcript isomorph
Gene id: XLOC_003067
Gene Name: XLOC_003067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-232
0.036
1
7mer
193-215
0.003
0
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