LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000980
hsa-miR-34c-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000616
Biotype: transcript isomorph
Gene id: XLOC_000980
Gene Name: XLOC_000980
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-309
0.036
1
6mer
424-443
0.005
1
RNF219-AS1
hsa-miR-34c-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606429
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1137
0.017
3
8mer
1989-2004
0.015
1
6mer
1848-1874
0.006
5
6mer
53-69
0.004
1
XLOC_014347
hsa-miR-34c-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029677
Biotype: transcript isomorph
Gene id: XLOC_014347
Gene Name: XLOC_014347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-330
0.041
1
RP11-495K9.3
hsa-miR-34c-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508505
Biotype: lincRNA
Gene id: ENSG00000248703
Gene Name: RP11-495K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-783
0.010
1
6mer
6-29
0.009
1
6mer
1186-1208
0.007
1
7mer
471-491
0.005
0
6mer
903-929
0.004
0
6mer
272-298
0.004
0
6mer
170-195
0.002
Not Conserved
6mer
528-544
0.001
Not Conserved
RP4-756G23.5
hsa-miR-34c-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451176
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-258
0.020
6
7mer
112-130
0.019
7
6mer
733-756
0.002
0
LINC00999
hsa-miR-34c-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
342-364
0.006
1
6mer
4909-4926
0.006
1
6mer
5-31
0.005
1
7mer
1023-1049
0.004
1
6mer
4693-4712
0.004
1
6mer
4941-4958
0.003
1
6mer
2016-2038
0.002
1
6mer
1439-1465
0.001
0
6mer
1598-1625
0.001
0
6mer
1090-1113
0.001
0
6mer
3818-3837
0.001
0
6mer
1227-1240
0.001
0
6mer
1245-1272
0.001
0
6mer
2357-2376
0.001
0
6mer
1756-1783
0.001
0
6mer
1278-1304
0.001
0
6mer
2123-2145
0.001
0
6mer
1672-1688
0.001
0
6mer
1693-1720
0.001
0
6mer
2248-2274
0.001
Not Conserved
6mer
2257-2278
0.000
Not Conserved
6mer
2052-2077
0.000
Not Conserved
RP11-73B2.4
hsa-miR-34c-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450077
Biotype: lincRNA
Gene id: ENSG00000232817
Gene Name: RP11-73B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-439
0.041
0
XLOC_010383
hsa-miR-34c-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
908-924
0.017
0
6mer
243-260
0.013
0
6mer
339-364
0.011
0
LINC00839
hsa-miR-34c-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
57-72
0.014
1
6mer
1633-1658
0.014
1
6mer
1769-1790
0.005
0
6mer
128-149
0.005
0
6mer
964-986
0.002
Not Conserved
LINC00174
hsa-miR-34c-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
270-287
0.005
1
6mer
445-467
0.003
0
6mer
3480-3503
0.003
1
6mer
4366-4392
0.002
0
6mer
835-850
0.002
0
6mer
542-568
0.002
0
7mer
2079-2095
0.002
1
6mer
2273-2299
0.002
1
6mer
3694-3712
0.002
Not Conserved
6mer
2761-2788
0.001
0
6mer
1161-1187
0.001
1
6mer
3126-3153
0.001
0
6mer
1293-1309
0.001
0
6mer
3320-3343
0.001
1
6mer
1703-1719
0.001
0
6mer
1884-1900
0.001
0
6mer
2598-2623
0.001
1
6mer
2430-2446
0.001
1
6mer
3683-3703
0.001
0
6mer
994-1010
0.001
0
6mer
1093-1113
0.001
0
7mer
1575-1600
0.001
0
6mer
2530-2555
0.001
1
6mer
2493-2512
0.001
1
6mer
2526-2544
0.001
0
6mer
3095-3121
0.000
0
6mer
3014-3035
0.000
0
RP11-514P8.8
hsa-miR-34c-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000481893
Biotype: processed_transcript
Gene id: ENSG00000272949
Gene Name: RP11-514P8.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-26
0.023
1
7mer
3010-3032
0.008
0
7mer
708-732
0.004
1
7mer
269-287
0.003
1
6mer
2396-2415
0.003
6
XLOC_008456
hsa-miR-34c-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018164
Biotype: transcript isomorph
Gene id: XLOC_008456
Gene Name: XLOC_008456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-524
0.041
0
ERVK3-1
hsa-miR-34c-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000413518
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1140-1157
0.041
1
LINC00998
hsa-miR-34c-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441359
Biotype: lincRNA
Gene id: ENSG00000214194
Gene Name: LINC00998
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-188
0.035
5
6mer
660-683
0.006
4
CTA-280A3.2
hsa-miR-34c-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9383-9402
0.009
1
8mer
3894-3914
0.008
1
6mer
16-42
0.005
1
7mer
990-1014
0.004
1
7mer
1110-1123
0.003
1
6mer
89-109
0.003
0
6mer
7514-7534
0.002
1
6mer
2270-2286
0.002
2
6mer
2321-2345
0.001
6
6mer
5314-5337
0.001
1
6mer
4058-4084
0.001
1
6mer
7670-7691
0.001
0
6mer
6599-6624
0.001
0
6mer
3930-3953
0.001
1
6mer
6609-6630
0.000
1
XLOC_008668
hsa-miR-34c-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018386
Biotype: transcript isomorph
Gene id: XLOC_008668
Gene Name: XLOC_008668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1512-1526
0.013
0
8mer
1270-1288
0.009
0
6mer
321-339
0.007
2
7mer
996-1021
0.005
1
6mer
1708-1732
0.005
1
6mer
1559-1585
0.002
0
CTA-243E7.1
hsa-miR-34c-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4713-4732
0.022
0
6mer
12966-12984
0.003
0
6mer
13013-13030
0.003
0
7mer
1732-1754
0.002
1
6mer
1056-1071
0.002
2
6mer
7931-7953
0.002
1
6mer
1836-1855
0.001
1
6mer
2033-2055
0.001
0
6mer
7290-7315
0.001
1
6mer
10622-10648
0.001
1
6mer
5568-5590
0.001
1
6mer
9572-9592
0.001
Not Conserved
6mer
7264-7281
0.001
1
CTD-2561J22.5
hsa-miR-34c-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596705
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
521-543
0.028
0
6mer
115-138
0.006
0
6mer
102-128
0.005
0
CTD-2246P4.1
hsa-miR-34c-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585863
Biotype: lincRNA
Gene id: ENSG00000267065
Gene Name: CTD-2246P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
895-908
0.009
1
9mer
1002-1022
0.008
0
6mer
349-371
0.004
0
6mer
2165-2187
0.003
0
6mer
135-161
0.003
0
6mer
2006-2027
0.003
0
6mer
457-473
0.003
1
6mer
567-589
0.002
1
6mer
1555-1575
0.002
0
6mer
1425-1439
0.002
0
6mer
1545-1571
0.002
0
6mer
536-563
0.001
1
XLOC_011746
hsa-miR-34c-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024429
Biotype: transcript isomorph
Gene id: XLOC_011746
Gene Name: XLOC_011746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-74
0.040
1
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