LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
AC093901.1
hsa-miR-34b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449075
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
36-59
0.014
12
6mer
300-317
0.010
10
GRIK1-AS1
hsa-miR-34b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000309331
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
74-101
0.014
7
6mer
611-626
0.011
4
GRIK1-AS1
hsa-miR-34b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000423221
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
65-92
0.014
7
6mer
422-437
0.011
4
LINC00964
hsa-miR-34b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-346
0.012
3
7mer
493-515
0.007
1
6mer
3273-3288
0.005
2
6mer
2623-2638
0.002
Not Conserved
RP11-2C24.7
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621583
Biotype: lincRNA
Gene id: ENSG00000274678
Gene Name: RP11-2C24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
334-352
0.025
1
AC127904.2
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432047
Biotype: sense_intronic
Gene id: ENSG00000230732
Gene Name: AC127904.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
939-961
0.019
1
6mer
565-584
0.005
1
KCNA3
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3389-3393
0.007
2
6mer
786-800
0.007
4
6mer
82-86
0.006
0
7mer
1973-1993
0.004
3
XLOC_007500
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015582
Biotype: transcript isomorph
Gene id: XLOC_007500
Gene Name: XLOC_007500
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
694-719
0.016
1
7mer
447-463
0.009
1
RP11-210N13.4
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621343
Biotype: lincRNA
Gene id: ENSG00000276981
Gene Name: RP11-210N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-329
0.025
1
RP11-560I19.1
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446053
Biotype: lincRNA
Gene id: ENSG00000234418
Gene Name: RP11-560I19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-287
0.025
2
LINC00207
hsa-miR-34b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000460077
Biotype: lincRNA
Gene id: ENSG00000187012
Gene Name: LINC00207
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
246-259
0.025
4
CASC9
hsa-miR-34b-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523313
Biotype: lincRNA
Gene id: ENSG00000249395
Gene Name: CASC9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-443
0.013
Not Conserved
6mer
454-472
0.012
4
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