LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
RP11-250B2.6
hsa-miR-34b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1124-1139
0.011
5
6mer
955-977
0.009
7
6mer
49-70
0.005
1
XLOC_004019
hsa-miR-34b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009086
Biotype: transcript isomorph
Gene id: XLOC_004019
Gene Name: XLOC_004019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
830-847
0.025
5
RP11-71J2.1
hsa-miR-34b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449272
Biotype: lincRNA
Gene id: ENSG00000226296
Gene Name: RP11-71J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.025
2
FLJ33581
hsa-miR-34b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457274
Biotype: lincRNA
Gene id: ENSG00000230133
Gene Name: FLJ33581
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1801-1815
0.025
0
PART1
hsa-miR-34b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5331-5336
0.011
1
7mer
4334-4339
0.007
0
6mer
5461-5481
0.005
1
6mer
3214-3228
0.002
3
HCG24
hsa-miR-34b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414398
Biotype: antisense
Gene id: ENSG00000230313
Gene Name: HCG24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
689-711
0.025
1
XLOC_004784
hsa-miR-34b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009639
Biotype: transcript isomorph
Gene id: XLOC_004784
Gene Name: XLOC_004784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-587
0.014
1
6mer
94-105
0.006
2
6mer
1729-1749
0.005
2
AC062029.1
hsa-miR-34b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453008
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
290-310
0.017
9
6mer
152-156
0.008
4
AC079117.1
hsa-miR-34b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110284.1
Biotype: antisense
Gene id: NR_110284.1 (gene)
Gene Name: AC079117.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-604
0.018
3
7mer
37-57
0.007
1
COLCA1
hsa-miR-34b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4878-4882
0.015
13
7mer
1075-1089
0.006
0
6mer
3977-3996
0.002
5
7mer
2172-2185
0.002
1
EPB41L4A-AS1
hsa-miR-34b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000413221
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2280-2300
0.014
1
7mer
1004-1025
0.012
2
CTC-550B14.7
hsa-miR-34b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593060
Biotype: antisense
Gene id: ENSG00000267265
Gene Name: CTC-550B14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-148
0.025
1
RP11-112L6.2
hsa-miR-34b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000451960
Biotype: lincRNA
Gene id: ENSG00000234698
Gene Name: RP11-112L6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-110
0.025
1
AC079117.1
hsa-miR-34b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445178
Biotype: antisense
Gene id: ENSG00000234653
Gene Name: AC079117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-604
0.018
3
7mer
37-57
0.007
1
STXBP5-AS1
hsa-miR-34b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433308
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
63-90
0.014
3
6mer
507-511
0.008
1
6mer
459-485
0.003
0
AF127936.3
hsa-miR-34b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454128
Biotype: lincRNA
Gene id: ENSG00000232884
Gene Name: AF127936.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-250
0.014
1
7mer
545-557
0.011
0
CASC18
hsa-miR-34b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548557
Biotype: lincRNA
Gene id: ENSG00000257859
Gene Name: CASC18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2000-2027
0.021
3
6mer
608-627
0.004
3
RP11-147C23.1
hsa-miR-34b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442558
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-81
0.025
1
CTB-134F13.1
hsa-miR-34b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564672
Biotype: antisense
Gene id: ENSG00000260545
Gene Name: CTB-134F13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-43
0.025
7
RP11-271F18.4
hsa-miR-34b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000602311
Biotype: lincRNA
Gene id: ENSG00000270111
Gene Name: RP11-271F18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-288
0.025
1
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