LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
RP4-760C5.3
hsa-miR-34b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448580
Biotype: lincRNA
Gene id: ENSG00000231081
Gene Name: RP4-760C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-44
0.026
0
RP11-631N16.2
hsa-miR-34b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7941-7956
0.008
1
7mer
7986-7991
0.007
3
7mer
7793-7817
0.006
2
6mer
2610-2634
0.003
2
6mer
4181-4191
0.002
1
LINC00421
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-843
0.026
0
PARD6G-AS1
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-360
0.015
1
7mer
520-530
0.007
0
6mer
309-330
0.004
0
RP11-154D6.1
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591156
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-518
0.017
1
6mer
756-760
0.009
3
XLOC_005303
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011820
Biotype: transcript isomorph
Gene id: XLOC_005303
Gene Name: XLOC_005303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
418-431
0.026
1
XLOC_011937
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024644
Biotype: transcript isomorph
Gene id: XLOC_011937
Gene Name: XLOC_011937
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-59
0.019
5
6mer
69-94
0.007
7
XLOC_010290
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-843
0.025
0
TEX36-AS1
hsa-miR-34b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446081
Biotype: antisense
Gene id: ENSG00000237675
Gene Name: TEX36-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
660-680
0.025
1
RP11-436D23.1
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607823
Biotype: lincRNA
Gene id: ENSG00000271860
Gene Name: RP11-436D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-143
0.011
1
6mer
1637-1651
0.007
2
6mer
87-108
0.007
4
RP11-340I6.7
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600182
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-646
0.025
0
RP4-568F9.6
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457009
Biotype: lincRNA
Gene id: ENSG00000230010
Gene Name: RP4-568F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1900-1905
0.016
1
6mer
133-137
0.006
0
6mer
1799-1821
0.003
1
L34079.3
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597119
Biotype: antisense
Gene id: ENSG00000269177
Gene Name: L34079.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-321
0.025
1
RP11-231E6.1
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-67
0.017
1
6mer
197-218
0.008
0
RP11-474D1.3
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-544
0.011
1
8mer
1410-1431
0.006
Not Conserved
6mer
2887-2907
0.004
Not Conserved
6mer
2379-2389
0.004
1
CTD-2292M16.8
hsa-miR-34b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556738
Biotype: lincRNA
Gene id: ENSG00000258768
Gene Name: CTD-2292M16.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-151
0.012
0
6mer
512-522
0.004
1
7mer
2578-2603
0.004
1
7mer
2731-2747
0.003
2
6mer
2817-2831
0.002
1
OR2A1-AS1
hsa-miR-34b-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000498397
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
151-170
0.025
Not Conserved
FGF14-AS1
hsa-miR-34b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451630
Biotype: antisense
Gene id: ENSG00000234445
Gene Name: FGF14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-192
0.015
3
6mer
180-184
0.010
5
FTX
hsa-miR-34b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429124
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2008-2031
0.013
0
7mer
2025-2043
0.013
2
RP11-764K9.1
hsa-miR-34b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2250-2270
0.015
0
6mer
887-908
0.010
0
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