LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
AP001136.2
hsa-miR-34b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000425058
Biotype: antisense
Gene id: ENSG00000226771
Gene Name: AP001136.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
587-605
0.022
2
6mer
515-526
0.005
0
RP11-288L9.1
hsa-miR-34b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440492
Biotype: lincRNA
Gene id: ENSG00000233975
Gene Name: RP11-288L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-44
0.027
1
FLJ39080
hsa-miR-34b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523118
Biotype: lincRNA
Gene id: ENSG00000254349
Gene Name: FLJ39080
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-268
0.018
4
7mer
474-484
0.009
0
AP001626.1
hsa-miR-34b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419628
Biotype: lincRNA
Gene id: ENSG00000225431
Gene Name: AP001626.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-224
0.016
1
6mer
42-46
0.008
1
6mer
618-643
0.003
0
RP11-74J13.8
hsa-miR-34b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000620300
Biotype: antisense
Gene id: ENSG00000278390
Gene Name: RP11-74J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-466
0.027
0
RP11-19D2.2
hsa-miR-34b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569178
Biotype: lincRNA
Gene id: ENSG00000261249
Gene Name: RP11-19D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1470-1494
0.027
1
AQP4-AS1
hsa-miR-34b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568797
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1991-2006
0.016
10
6mer
1564-1580
0.010
8
XLOC_013413
hsa-miR-34b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027424
Biotype: transcript isomorph
Gene id: XLOC_013413
Gene Name: XLOC_013413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-510
0.013
0
7mer
754-767
0.010
0
6mer
236-256
0.005
Not Conserved
RP11-252I13.2
hsa-miR-34b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509458
Biotype: lincRNA
Gene id: ENSG00000249959
Gene Name: RP11-252I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
528-543
0.021
5
6mer
145-172
0.005
0
LINC00927
hsa-miR-34b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561432
Biotype: lincRNA
Gene id: ENSG00000259361
Gene Name: LINC00927
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-259
0.027
0
NLGN1-AS1
hsa-miR-34b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423873
Biotype: antisense
Gene id: ENSG00000228213
Gene Name: NLGN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-159
0.027
1
LINC00964
hsa-miR-34b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-299
0.012
3
7mer
446-468
0.007
1
6mer
3226-3241
0.006
2
6mer
2576-2591
0.002
Not Conserved
RP11-165H23.1
hsa-miR-34b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_109771.1
Biotype: lincRNA
Gene id: NR_109771.1 (gene)
Gene Name: RP11-165H23.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-194
0.012
3
6mer
101-121
0.010
4
6mer
208-232
0.005
Not Conserved
RP11-171I2.2
hsa-miR-34b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-375
0.011
8
7mer
794-799
0.009
6
6mer
268-291
0.007
6
LINC00442
hsa-miR-34b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-33
0.014
0
6mer
455-480
0.010
1
6mer
1047-1060
0.002
0
RP11-102M11.2
hsa-miR-34b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000564748
Biotype: antisense
Gene id: ENSG00000261758
Gene Name: RP11-102M11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2116-2129
0.011
1
7mer
2806-2819
0.010
1
6mer
2938-2949
0.006
2
COLCA1
hsa-miR-34b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532918
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4935-4939
0.017
13
7mer
1132-1146
0.005
0
6mer
4034-4053
0.003
5
7mer
2229-2242
0.002
1
XLOC_010288
hsa-miR-34b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-33
0.014
0
6mer
455-480
0.010
1
6mer
1047-1060
0.002
0
RP11-143G3.1
hsa-miR-34b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414071
Biotype: antisense
Gene id: ENSG00000234712
Gene Name: RP11-143G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-34
0.027
2
CTB-92J24.2
hsa-miR-34b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1338-1362
0.027
0
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