LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000647
hsa-miR-34b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002272
Biotype: transcript isomorph
Gene id: XLOC_000647
Gene Name: XLOC_000647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-276
0.020
2
6mer
1145-1163
0.005
0
6mer
539-558
0.003
1
RP11-549J18.1
hsa-miR-34b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505668
Biotype: sense_intronic
Gene id: ENSG00000251023
Gene Name: RP11-549J18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-437
0.020
1
7mer
962-967
0.008
2
LINC01376
hsa-miR-34b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432142
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
75-90
0.018
10
6mer
86-107
0.009
4
RP11-519C12.1
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566282
Biotype: sense_intronic
Gene id: ENSG00000259935
Gene Name: RP11-519C12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-287
0.016
3
8mer
211-238
0.012
2
PTPRD-AS1
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447950
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
882-896
0.027
3
XLOC_007078
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
927-940
0.027
1
CDKN2B-AS1
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000580576
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1417-1436
0.013
3
7mer
2050-2068
0.012
3
6mer
971-996
0.002
0
RP4-668E10.4
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000613936
Biotype: lincRNA
Gene id: ENSG00000278254
Gene Name: RP4-668E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-489
0.027
0
LINC00680
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2356-2370
0.016
0
6mer
2020-2047
0.011
0
XLOC_008031
hsa-miR-34b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017436
Biotype: transcript isomorph
Gene id: XLOC_008031
Gene Name: XLOC_008031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
357-379
0.027
0
CTA-228A9.4
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
69-84
0.006
0
6mer
819-826
0.004
1
7mer
18744-18756
0.003
0
7mer
17415-17431
0.003
0
7mer
16657-16670
0.003
0
6mer
317-342
0.003
0
6mer
6026-6052
0.002
1
7mer
18522-18540
0.002
Not Conserved
6mer
3677-3704
0.002
1
XLOC_009839
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020522
Biotype: transcript isomorph
Gene id: XLOC_009839
Gene Name: XLOC_009839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1872-1893
0.027
6
LOC388692
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3404-3416
0.008
0
7mer
1263-1274
0.006
1
6mer
11833-11837
0.006
1
6mer
11904-11930
0.005
1
6mer
8582-8599
0.002
1
TMEM92-AS1
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000508851
Biotype: antisense
Gene id: ENSG00000251179
Gene Name: TMEM92-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-88
0.022
1
6mer
178-193
0.005
1
RP11-468H14.2
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000513892
Biotype: lincRNA
Gene id: ENSG00000249258
Gene Name: RP11-468H14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1692-1708
0.014
2
7mer
2170-2184
0.009
1
6mer
1939-1950
0.004
1
RP11-313F23.4
hsa-miR-34b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545923
Biotype: lincRNA
Gene id: ENSG00000255652
Gene Name: RP11-313F23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-54
0.022
1
7mer
457-469
0.006
Not Conserved
LINC01277
hsa-miR-34b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419957
Biotype: lincRNA
Gene id: ENSG00000229017
Gene Name: LINC01277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-673
0.023
1
6mer
1441-1458
0.004
2
XLOC_004952
hsa-miR-34b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009750
Biotype: transcript isomorph
Gene id: XLOC_004952
Gene Name: XLOC_004952
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
528-543
0.018
5
6mer
145-172
0.005
0
7mer
925-945
0.004
1
XLOC_013263
hsa-miR-34b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1515-1536
0.012
0
6mer
2229-2249
0.009
1
7mer
2482-2501
0.006
0
AC015849.16
hsa-miR-34b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604647
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-150
0.027
1
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