LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
RP11-111F5.8
hsa-miR-34b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3248-3255
0.017
0
6mer
417-430
0.007
0
6mer
369-393
0.005
0
SMC2-AS1
hsa-miR-34b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6963-6981
0.018
1
6mer
5649-5666
0.005
6
6mer
2998-3025
0.003
1
6mer
6088-6109
0.002
0
6mer
3372-3398
0.002
1
RP11-439L18.3
hsa-miR-34b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038987.1
Biotype: lincRNA
Gene id: NR_038987.1 (gene)
Gene Name: RP11-439L18.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-673
0.023
1
6mer
1441-1458
0.006
2
XLOC_012681
hsa-miR-34b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026334
Biotype: transcript isomorph
Gene id: XLOC_012681
Gene Name: XLOC_012681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-573
0.019
1
6mer
832-858
0.011
4
RP11-663N22.1
hsa-miR-34b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581944
Biotype: lincRNA
Gene id: ENSG00000265246
Gene Name: RP11-663N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-70
0.029
1
RP11-120M18.2
hsa-miR-34b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590353
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-710
0.026
10
6mer
654-673
0.003
1
XLOC_008111
hsa-miR-34b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016946
Biotype: transcript isomorph
Gene id: XLOC_008111
Gene Name: XLOC_008111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-568
0.009
4
7mer
744-766
0.006
2
6mer
1488-1510
0.006
4
6mer
1350-1367
0.003
1
6mer
534-555
0.003
1
6mer
725-729
0.002
1
RP11-281P23.1
hsa-miR-34b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515343
Biotype: lincRNA
Gene id: ENSG00000251152
Gene Name: RP11-281P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-55
0.017
1
6mer
27-40
0.006
2
7mer
2221-2241
0.006
2
RP11-446H18.5
hsa-miR-34b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597154
Biotype: lincRNA
Gene id: ENSG00000239828
Gene Name: RP11-446H18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-125
0.023
1
6mer
737-759
0.006
2
AC010745.4
hsa-miR-34b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420130
Biotype: lincRNA
Gene id: ENSG00000232444
Gene Name: AC010745.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-37
0.013
1
6mer
145-159
0.011
4
6mer
134-144
0.004
0
RP11-760D2.5
hsa-miR-34b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-658
0.024
0
6mer
898-911
0.003
Not Conserved
6mer
1588-1599
0.003
Not Conserved
XLOC_001592
hsa-miR-34b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002716
Biotype: transcript isomorph
Gene id: XLOC_001592
Gene Name: XLOC_001592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2438-2461
0.022
1
6mer
1351-1376
0.003
4
6mer
1647-1657
0.003
2
RP11-31H5.3
hsa-miR-34b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000614966
Biotype: sense_intronic
Gene id: ENSG00000274667
Gene Name: RP11-31H5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-325
0.029
1
RP11-1078H9.5
hsa-miR-34b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553826
Biotype: antisense
Gene id: ENSG00000259163
Gene Name: RP11-1078H9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-74
0.029
Not Conserved
XLOC_008461
hsa-miR-34b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-183
0.014
1
7mer
309-320
0.014
1
SATB1-AS1
hsa-miR-34b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593741
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
895-915
0.020
3
8mer
703-709
0.008
0
XLOC_000682
hsa-miR-34b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000460
Biotype: transcript isomorph
Gene id: XLOC_000682
Gene Name: XLOC_000682
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-33
0.025
0
7mer
945-962
0.003
1
HCG17
hsa-miR-34b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455957
Biotype: lincRNA
Gene id: ENSG00000270604
Gene Name: HCG17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
132-153
0.028
2
LINC00366
hsa-miR-34b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046999.1
Biotype: lincRNA
Gene id: NR_046999.1 (gene)
Gene Name: LINC00366
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-437
0.028
1
RP11-106D4.2
hsa-miR-34b-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612833
Biotype: sense_intronic
Gene id: ENSG00000276337
Gene Name: RP11-106D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
541-554
0.019
1
6mer
220-224
0.006
1
6mer
3251-3269
0.003
Not Conserved
6mer
2165-2177
0.001
0
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