LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34b-3p


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Gene
miRNA
Score
DIANA Links
AC007317.1
hsa-miR-34b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420187
Biotype: lincRNA
Gene id: ENSG00000233128
Gene Name: AC007317.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-437
0.030
1
NR2F1-AS1
hsa-miR-34b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606696
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-752
0.016
0
6mer
36-40
0.007
1
7mer
2191-2203
0.006
1
XLOC_009534
hsa-miR-34b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019740
Biotype: transcript isomorph
Gene id: XLOC_009534
Gene Name: XLOC_009534
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-265
0.030
2
XLOC_002720
hsa-miR-34b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006111
Biotype: transcript isomorph
Gene id: XLOC_002720
Gene Name: XLOC_002720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-689
0.030
1
AC000403.4
hsa-miR-34b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-57
0.024
3
6mer
124-149
0.003
0
6mer
2062-2067
0.002
Not Conserved
6mer
2231-2253
0.001
0
OIP5-AS1
hsa-miR-34b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2959-2981
0.012
1
8mer
7851-7863
0.009
0
7mer
3358-3371
0.003
1
6mer
3995-4014
0.003
5
6mer
6579-6589
0.002
2
6mer
1462-1480
0.001
0
LINC01224
hsa-miR-34b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1809-1831
0.010
1
6mer
1770-1787
0.009
1
7mer
1536-1558
0.008
0
6mer
519-539
0.003
Not Conserved
XLOC_012658
hsa-miR-34b-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026319
Biotype: transcript isomorph
Gene id: XLOC_012658
Gene Name: XLOC_012658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-211
0.017
1
6mer
130-155
0.006
1
6mer
93-106
0.006
0
RP1-93H18.7
hsa-miR-34b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606179
Biotype: lincRNA
Gene id: ENSG00000272403
Gene Name: RP1-93H18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-480
0.013
0
6mer
17-34
0.009
4
6mer
105-109
0.007
3
C1orf180
hsa-miR-34b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000370624
Biotype: lincRNA
Gene id: ENSG00000180869
Gene Name: C1orf180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-808
0.020
1
7mer
2841-2846
0.008
0
6mer
1200-1215
0.002
1
NR2F1-AS1
hsa-miR-34b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504474
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-752
0.016
0
6mer
36-40
0.008
1
7mer
2191-2203
0.006
1
PCBP2-OT1
hsa-miR-34b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
458-476
0.030
8
RP11-139H15.7
hsa-miR-34b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616335
Biotype: sense_intronic
Gene id: ENSG00000274765
Gene Name: RP11-139H15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-196
0.029
1
RP11-1078H9.5
hsa-miR-34b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557007
Biotype: antisense
Gene id: ENSG00000259163
Gene Name: RP11-1078H9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-72
0.029
Not Conserved
RP11-1078H9.5
hsa-miR-34b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110134.1
Biotype: antisense
Gene id: NR_110134.1 (gene)
Gene Name: RP11-1078H9.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-83
0.029
Not Conserved
RP11-446H18.6
hsa-miR-34b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609969
Biotype: lincRNA
Gene id: ENSG00000272597
Gene Name: RP11-446H18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-163
0.029
3
XLOC_001668
hsa-miR-34b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1510-1515
0.010
1
6mer
2336-2348
0.008
1
6mer
5502-5512
0.006
0
6mer
3460-3471
0.006
1
RP11-88E10.4
hsa-miR-34b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613809
Biotype: lincRNA
Gene id: ENSG00000277159
Gene Name: RP11-88E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1261-1276
0.016
1
7mer
2394-2406
0.005
1
7mer
3137-3154
0.005
0
7mer
2577-2597
0.003
0
SNHG23
hsa-miR-34b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555354
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-396
0.029
1
XLOC_004915
hsa-miR-34b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010981
Biotype: transcript isomorph
Gene id: XLOC_004915
Gene Name: XLOC_004915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34b-3p
Sequence: caaucacuaacuccacugccau
MirBase ID: MIMAT0004676
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-426
0.029
0
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