LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2537I9.12
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589456
Biotype: antisense
Gene id: ENSG00000267523
Gene Name: CTD-2537I9.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-513
0.025
4
XLOC_006283
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014228
Biotype: transcript isomorph
Gene id: XLOC_006283
Gene Name: XLOC_006283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-548
0.022
1
6mer
753-769
0.003
2
SIK3-IT1
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-438
0.018
5
6mer
54-79
0.006
3
6mer
1290-1306
0.001
0
LINC01019
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505443
Biotype: lincRNA
Gene id: ENSG00000248118
Gene Name: LINC01019
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2047-2063
0.011
1
8mer+wobble
3006-3023
0.008
0
8mer
2335-2352
0.006
Not Conserved
RP11-405M12.4
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613588
Biotype: lincRNA
Gene id: ENSG00000273669
Gene Name: RP11-405M12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-123
0.013
1
6mer
573-593
0.007
0
6mer
535-552
0.005
0
RP1-101G11.3
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
5329-5348
0.005
0
8mer+wobble
4359-4379
0.004
2
6mer
721-740
0.004
1
7mer
8511-8530
0.003
1
6mer
6239-6249
0.003
7
6mer
9652-9675
0.002
0
6mer
1489-1515
0.002
1
6mer
5599-5618
0.001
3
6mer
8029-8053
0.001
1
CTD-2560E9.5
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531663
Biotype: antisense
Gene id: ENSG00000254497
Gene Name: CTD-2560E9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-273
0.025
3
MGC15885
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026897.1
Biotype: antisense
Gene id: NR_026897.1 (gene)
Gene Name: MGC15885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1363-1386
0.025
2
RP11-16C18.3
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425588
Biotype: antisense
Gene id: ENSG00000237027
Gene Name: RP11-16C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-210
0.017
2
6mer
15-31
0.005
2
6mer
208-227
0.002
1
XLOC_009222
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3944-3965
0.016
0
6mer
5454-5473
0.009
0
RP11-361D14.2
hsa-miR-34a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000568324
Biotype: lincRNA
Gene id: ENSG00000261129
Gene Name: RP11-361D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1970-1981
0.022
2
6mer
855-880
0.002
1
LINC01256
hsa-miR-34a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513270
Biotype: lincRNA
Gene id: ENSG00000251398
Gene Name: LINC01256
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-422
0.020
2
6mer
354-380
0.005
1
AC073834.3
hsa-miR-34a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000357045
Biotype: antisense
Gene id: ENSG00000237655
Gene Name: AC073834.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-253
0.025
4
LINC00624
hsa-miR-34a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621316
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2824-2848
0.022
1
6mer
2345-2365
0.003
2
XLOC_002630
hsa-miR-34a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006821
Biotype: transcript isomorph
Gene id: XLOC_002630
Gene Name: XLOC_002630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-290
0.009
0
7mer
222-249
0.005
1
6mer
67-89
0.004
1
6mer
186-210
0.003
1
6mer
669-686
0.002
0
6mer
244-260
0.002
0
LINC00906
hsa-miR-34a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589921
Biotype: lincRNA
Gene id: ENSG00000267339
Gene Name: LINC00906
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-199
0.022
1
6mer
2963-2985
0.002
1
6mer
1486-1508
0.001
0
XLOC_006752
hsa-miR-34a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015260
Biotype: transcript isomorph
Gene id: XLOC_006752
Gene Name: XLOC_006752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-221
0.020
7
6mer
308-325
0.005
1
RP5-875H18.10
hsa-miR-34a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620020
Biotype: antisense
Gene id: ENSG00000275025
Gene Name: RP5-875H18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-309
0.021
0
6mer
359-377
0.003
0
RP11-428J1.4
hsa-miR-34a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2967-2983
0.012
1
7mer
2436-2457
0.009
0
7mer
1948-1965
0.002
1
6mer
1989-2011
0.002
1
RP11-267L5.1
hsa-miR-34a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523682
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.025
Not Conserved
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