LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
C16orf3
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000623094
Biotype: antisense
Gene id: ENSG00000221819
Gene Name: C16orf3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.021
1
7mer
215-236
0.004
0
RP11-216L13.19
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000459985
Biotype: retained_intron
Gene id: ENSG00000273066
Gene Name: RP11-216L13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-152
0.024
2
6mer
491-516
0.001
1
RP11-731J8.2
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4577-4592
0.016
0
6mer
534-552
0.003
1
6mer
3671-3691
0.002
3
6mer
5044-5058
0.002
5
7mer
1200-1226
0.002
1
6mer
1196-1221
0.001
1
RP11-452F19.3
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426045
Biotype: lincRNA
Gene id: ENSG00000228106
Gene Name: RP11-452F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-172
0.025
1
RP11-264B14.2
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000593107
Biotype: antisense
Gene id: ENSG00000267449
Gene Name: RP11-264B14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-110
0.025
0
ZFHX4-AS1
hsa-miR-34a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518143
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-170
0.022
1
6mer
457-475
0.003
0
RP5-1024G6.7
hsa-miR-34a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569869
Biotype: antisense
Gene id: ENSG00000259818
Gene Name: RP5-1024G6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-344
0.016
0
6mer
410-426
0.004
1
6mer
2855-2880
0.003
0
6mer
2909-2926
0.002
0
RP11-398J5.1
hsa-miR-34a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583980
Biotype: antisense
Gene id: ENSG00000266711
Gene Name: RP11-398J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-377
0.020
1
7mer
373-390
0.005
0
RP4-695O20.1
hsa-miR-34a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624818
Biotype: sense_intronic
Gene id: ENSG00000280384
Gene Name: RP4-695O20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.022
1
6mer
1858-1885
0.002
0
6mer
1041-1064
0.001
Not Conserved
RP3-431P23.5
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000597278
Biotype: lincRNA
Gene id: ENSG00000269155
Gene Name: RP3-431P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2184-2209
0.016
1
8mer
756-777
0.003
0
8mer
903-919
0.003
Not Conserved
6mer
2195-2215
0.002
1
6mer
732-756
0.002
3
RP11-206M11.7
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489011
Biotype: antisense
Gene id: ENSG00000244468
Gene Name: RP11-206M11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-94
0.025
0
RP11-321E2.3
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505844
Biotype: lincRNA
Gene id: ENSG00000248455
Gene Name: RP11-321E2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-200
0.025
3
RP1-309I22.2
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
28617-28638
0.003
Not Conserved
6mer
24428-24454
0.003
7
6mer
27767-27783
0.002
4
7mer
13125-13144
0.002
1
6mer
23940-23958
0.002
4
6mer
15032-15050
0.002
1
6mer
11563-11588
0.002
3
6mer
18773-18798
0.002
4
6mer
1618-1640
0.001
1
6mer
2166-2183
0.001
1
6mer
7419-7435
0.001
1
6mer
9059-9074
0.001
1
6mer
26714-26737
0.001
1
6mer
23192-23206
0.001
1
AC097713.4
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439798
Biotype: lincRNA
Gene id: ENSG00000231682
Gene Name: AC097713.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-142
0.018
1
7mer
397-418
0.007
0
RP11-862L9.3
hsa-miR-34a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580580
Biotype: antisense
Gene id: ENSG00000266844
Gene Name: RP11-862L9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-101
0.025
1
RP11-356J5.13
hsa-miR-34a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000595053
Biotype: antisense
Gene id: ENSG00000268472
Gene Name: RP11-356J5.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-323
0.021
3
6mer
853-876
0.004
1
ZFHX4-AS1
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024360.1
Biotype: antisense
Gene id: NR_024360.1 (gene)
Gene Name: ZFHX4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-172
0.022
1
6mer
459-477
0.003
0
SNHG14
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553108
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1435-1459
0.025
1
LINC00969
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420851
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.014
1
6mer
581-601
0.007
5
7mer
609-619
0.003
Not Conserved
RP3-448I9.1
hsa-miR-34a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434947
Biotype: lincRNA
Gene id: ENSG00000234540
Gene Name: RP3-448I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-116
0.025
1
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