LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
AC144450.1
hsa-miR-34a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438247
Biotype: antisense
Gene id: ENSG00000228613
Gene Name: AC144450.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-84
0.014
0
7mer
402-418
0.012
1
AC005609.16
hsa-miR-34a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624176
Biotype: antisense
Gene id: ENSG00000279726
Gene Name: AC005609.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-47
0.026
0
BACE1-AS
hsa-miR-34a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000618857
Biotype: antisense
Gene id: ENSG00000278768
Gene Name: BACE1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-658
0.017
1
6mer
332-357
0.005
7
6mer
189-215
0.004
1
MDS2
hsa-miR-34a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027042.1
Biotype: sense
Gene id: NR_027042.1 (gene)
Gene Name: MDS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-171
0.025
Not Conserved
RP11-400K9.4
hsa-miR-34a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1611-1632
0.012
1
6mer
252-273
0.005
1
6mer
1679-1705
0.004
1
6mer
721-739
0.003
1
6mer
159-184
0.002
Not Conserved
LINC01079
hsa-miR-34a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000431171
Biotype: lincRNA
Gene id: ENSG00000229609
Gene Name: LINC01079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
477-491
0.008
4
6mer
58-73
0.007
3
7mer
379-398
0.005
0
6mer
427-453
0.005
1
STAG3L5P-PVRIG2P-PILRB
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2417-2436
0.017
Not Conserved
6mer
443-461
0.007
3
6mer
1896-1919
0.002
0
RP11-154H23.3
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1078-1096
0.016
1
6mer
2341-2358
0.005
0
6mer
1432-1456
0.005
3
RP11-120D5.1
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608176
Biotype: lincRNA
Gene id: ENSG00000234129
Gene Name: RP11-120D5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
464-491
0.012
Not Conserved
7mer
1282-1292
0.010
1
6mer
177-198
0.003
Not Conserved
XLOC_007824
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016459
Biotype: transcript isomorph
Gene id: XLOC_007824
Gene Name: XLOC_007824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.020
1
6mer
215-237
0.005
0
RP11-203L2.4
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442103
Biotype: antisense
Gene id: ENSG00000236733
Gene Name: RP11-203L2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-216
0.025
0
RP5-983L19.2
hsa-miR-34a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000447372
Biotype: lincRNA
Gene id: ENSG00000226954
Gene Name: RP5-983L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2300-2316
0.011
0
8mer
2652-2678
0.010
0
6mer
3296-3313
0.004
1
CTD-2540B15.6
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590492
Biotype: antisense
Gene id: ENSG00000267714
Gene Name: CTD-2540B15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-147
0.018
0
7mer
553-574
0.007
0
XXbac-B476C20.13
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441167
Biotype: sense_intronic
Gene id: ENSG00000234913
Gene Name: XXbac-B476C20.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2136-2153
0.020
1
6mer
1905-1924
0.003
0
6mer
1574-1594
0.002
0
6mer
1408-1431
0.001
0
TOLLIP-AS1
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530897
Biotype: antisense
Gene id: ENSG00000255153
Gene Name: TOLLIP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
890-915
0.025
0
LINC00458
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451744
Biotype: lincRNA
Gene id: ENSG00000234787
Gene Name: LINC00458
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-657
0.021
Not Conserved
6mer
61-77
0.005
1
TRIM52-AS1
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000433265
Biotype: antisense
Gene id: ENSG00000248275
Gene Name: TRIM52-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-136
0.025
1
RP11-279F6.1
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000498938
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-392
0.025
1
RP3-467K16.4
hsa-miR-34a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2547-2573
0.025
4
STXBP5-AS1
hsa-miR-34a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606831
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1907-1926
0.018
1
6mer
1534-1559
0.003
1
6mer
1136-1158
0.002
1
6mer
537-547
0.002
0
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