LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2566J3.1
hsa-miR-34a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554679
Biotype: antisense
Gene id: ENSG00000258837
Gene Name: CTD-2566J3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-398
0.018
3
6mer
447-470
0.007
2
NR2F1-AS1
hsa-miR-34a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607831
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-80
0.023
1
6mer
276-301
0.003
1
FAM230B
hsa-miR-34a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430463
Biotype: retained_intron
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-40
0.026
Not Conserved
RP11-267L5.1
hsa-miR-34a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520543
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-436
0.026
Not Conserved
LINC00710
hsa-miR-34a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600516
Biotype: lincRNA
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-481
0.019
1
6mer
242-264
0.006
7
KB-1183D5.13
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000411581
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-310
0.026
Not Conserved
RP11-348F1.2
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455931
Biotype: lincRNA
Gene id: ENSG00000226530
Gene Name: RP11-348F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-176
0.015
1
7mer
218-244
0.009
1
6mer
244-258
0.002
0
RP11-430C1.1
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-135
0.012
0
7mer
2919-2943
0.006
2
8mer
3208-3228
0.006
1
6mer
4714-4730
0.001
1
6mer
2658-2675
0.001
0
LINC00969
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615493
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-92
0.026
1
TEN1-CDK3
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037709.1
Biotype: sense
Gene id: NR_037709.1 (gene)
Gene Name: TEN1-CDK3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1969-1980
0.015
6
6mer
2164-2191
0.004
12
6mer
159-177
0.003
0
6mer
2649-2675
0.002
2
6mer
3012-3037
0.002
1
LINC00667
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582008
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3690-3712
0.011
0
7mer
578-600
0.007
1
7mer
596-619
0.005
1
6mer
2514-2533
0.002
1
6mer
1777-1804
0.001
1
AC144449.1
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449714
Biotype: antisense
Gene id: ENSG00000231969
Gene Name: AC144449.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
835-853
0.019
0
6mer
743-765
0.004
1
6mer
500-517
0.002
0
RP11-752D24.2
hsa-miR-34a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504048
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-33
0.026
1
XLOC_012041
hsa-miR-34a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024306
Biotype: transcript isomorph
Gene id: XLOC_012041
Gene Name: XLOC_012041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-290
0.010
2
8mer
2444-2455
0.005
1
6mer
420-446
0.005
1
7mer
707-719
0.004
1
6mer
5547-5573
0.002
0
RP11-60H5.1
hsa-miR-34a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567718
Biotype: lincRNA
Gene id: ENSG00000260840
Gene Name: RP11-60H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-93
0.016
1
7mer
1579-1600
0.008
1
6mer
494-512
0.002
1
GPC5-AS1
hsa-miR-34a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_049776.1
Biotype: antisense
Gene id: NR_049776.1 (gene)
Gene Name: GPC5-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-177
0.026
0
RP11-3P17.5
hsa-miR-34a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602890
Biotype: lincRNA
Gene id: ENSG00000269888
Gene Name: RP11-3P17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-154
0.026
0
LINC00484
hsa-miR-34a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608240
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-357
0.026
1
XLOC_006253
hsa-miR-34a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013599
Biotype: transcript isomorph
Gene id: XLOC_006253
Gene Name: XLOC_006253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3450-3474
0.006
0
7mer
2508-2525
0.004
2
6mer
4703-4718
0.004
1
6mer
1994-2015
0.003
9
6mer
2849-2867
0.003
3
6mer
1125-1135
0.003
3
6mer
3190-3203
0.002
2
6mer
2350-2375
0.001
1
6mer
1128-1142
0.001
1
KCNMA1-AS1
hsa-miR-34a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429850
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1016-1039
0.010
1
7mer
2680-2705
0.010
2
6mer
1800-1821
0.003
7
6mer
776-798
0.002
1
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