LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009335
hsa-miR-34a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019541
Biotype: transcript isomorph
Gene id: XLOC_009335
Gene Name: XLOC_009335
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
678-704
0.026
1
RP4-647C14.3
hsa-miR-34a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556578
Biotype: antisense
Gene id: ENSG00000258944
Gene Name: RP4-647C14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-228
0.018
1
7mer
476-500
0.007
3
6mer
340-364
0.002
3
LINC01010
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038219.1
Biotype: lincRNA
Gene id: NR_038219.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-114
0.016
3
6mer
181-206
0.004
1
6mer
89-103
0.004
1
6mer
1268-1295
0.003
1
XLOC_013564
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028218
Biotype: transcript isomorph
Gene id: XLOC_013564
Gene Name: XLOC_013564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-125
0.026
1
XLOC_011217
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023919
Biotype: transcript isomorph
Gene id: XLOC_011217
Gene Name: XLOC_011217
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1227-1248
0.013
3
7mer
1834-1856
0.011
1
6mer
1279-1289
0.002
1
RP11-279F6.1
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560882
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-375
0.026
1
AC079630.2
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000457989
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-98
0.026
0
RP11-401P9.6
hsa-miR-34a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000379963
Biotype: antisense
Gene id: ENSG00000205414
Gene Name: RP11-401P9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2379-2403
0.020
1
6mer
1678-1703
0.004
4
6mer
647-670
0.001
1
AC007461.2
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000419257
Biotype: lincRNA
Gene id: ENSG00000226101
Gene Name: AC007461.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1145-1170
0.013
0
6mer
1943-1957
0.004
1
6mer
1329-1348
0.003
2
6mer
589-605
0.003
2
6mer
1458-1476
0.002
1
6mer
1230-1252
0.001
2
RP11-111F5.4
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2230-2251
0.010
0
6mer
860-886
0.008
0
6mer
1441-1455
0.008
0
XLOC_011091
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022820
Biotype: transcript isomorph
Gene id: XLOC_011091
Gene Name: XLOC_011091
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-182
0.022
1
6mer
60-86
0.004
1
AC144449.1
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110240.1
Biotype: antisense
Gene id: NR_110240.1 (gene)
Gene Name: AC144449.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
673-691
0.019
0
6mer
581-603
0.004
1
6mer
338-355
0.003
0
AC008703.1
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518418
Biotype: lincRNA
Gene id: ENSG00000253298
Gene Name: AC008703.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1758-1784
0.022
4
6mer
893-908
0.004
1
RP11-543D5.1
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454285
Biotype: lincRNA
Gene id: ENSG00000227947
Gene Name: RP11-543D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-650
0.018
3
6mer
799-812
0.008
7
AC017101.10
hsa-miR-34a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453665
Biotype: antisense
Gene id: ENSG00000227227
Gene Name: AC017101.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-222
0.026
2
LINC00475
hsa-miR-34a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417983
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-123
0.016
0
6mer
296-315
0.007
0
6mer
96-117
0.004
0
XLOC_006053
hsa-miR-34a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014106
Biotype: transcript isomorph
Gene id: XLOC_006053
Gene Name: XLOC_006053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-101
0.021
1
6mer
132-144
0.004
0
L34079.4
hsa-miR-34a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600242
Biotype: antisense
Gene id: ENSG00000269583
Gene Name: L34079.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-197
0.026
3
XLOC_004806
hsa-miR-34a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010324
Biotype: transcript isomorph
Gene id: XLOC_004806
Gene Name: XLOC_004806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-142
0.026
1
ITPK1-AS1
hsa-miR-34a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553639
Biotype: antisense
Gene id: ENSG00000258730
Gene Name: ITPK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3782-3808
0.018
1
7mer
964-987
0.006
1
6mer
2179-2200
0.001
1
6mer
2014-2040
0.001
1
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