LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-230C9.4
hsa-miR-34a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604082
Biotype: lincRNA
Gene id: ENSG00000271265
Gene Name: RP11-230C9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-127
0.026
4
LINC01532
hsa-miR-34a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589821
Biotype: lincRNA
Gene id: ENSG00000267014
Gene Name: LINC01532
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-285
0.026
2
RP11-496I9.1
hsa-miR-34a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527620
Biotype: antisense
Gene id: ENSG00000254815
Gene Name: RP11-496I9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
280-301
0.020
2
8mer
737-754
0.004
0
6mer
1639-1664
0.002
1
AC104777.2
hsa-miR-34a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441356
Biotype: lincRNA
Gene id: ENSG00000236049
Gene Name: AC104777.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2245-2259
0.018
0
7mer
549-573
0.004
1
6mer
1390-1409
0.004
4
SOX9-AS1
hsa-miR-34a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000533232
Biotype: retained_intron
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-26
0.026
3
NR2F1-AS1
hsa-miR-34a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607195
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-489
0.019
1
6mer
527-552
0.007
3
RP11-608B3.1
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503815
Biotype: lincRNA
Gene id: ENSG00000251048
Gene Name: RP11-608B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-193
0.026
0
RP11-497K21.1
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513093
Biotype: antisense
Gene id: ENSG00000249419
Gene Name: RP11-497K21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-888
0.026
1
LINC00640
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557295
Biotype: lincRNA
Gene id: ENSG00000258479
Gene Name: LINC00640
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-257
0.026
1
FLJ46284
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-271
0.026
1
XLOC_007805
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016437
Biotype: transcript isomorph
Gene id: XLOC_007805
Gene Name: XLOC_007805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1062-1081
0.026
Not Conserved
LINC00506
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3968-3995
0.020
0
6mer
36-53
0.004
1
6mer
3553-3569
0.002
0
LAMA5-AS1
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000487421
Biotype: antisense
Gene id: ENSG00000228812
Gene Name: LAMA5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-136
0.026
10
NR2F1-AS1
hsa-miR-34a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606188
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-502
0.026
1
XLOC_009350
hsa-miR-34a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019162
Biotype: transcript isomorph
Gene id: XLOC_009350
Gene Name: XLOC_009350
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1595
0.016
0
7mer
1032-1057
0.010
1
LINC00475
hsa-miR-34a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027341.1
Biotype: lincRNA
Gene id: NR_027341.1 (gene)
Gene Name: LINC00475
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-95
0.016
0
6mer
487-514
0.006
0
6mer
68-89
0.004
0
AC068282.3
hsa-miR-34a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433673
Biotype: lincRNA
Gene id: ENSG00000236682
Gene Name: AC068282.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-137
0.010
1
7mer
363-386
0.006
0
7mer
1158-1183
0.005
3
6mer
592-619
0.003
1
6mer
178-191
0.002
0
6mer
389-407
0.001
0
6mer
1179-1200
0.001
1
RP11-375N15.2
hsa-miR-34a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607598
Biotype: antisense
Gene id: ENSG00000272267
Gene Name: RP11-375N15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1166-1187
0.011
4
7mer
1004-1022
0.005
4
6mer
122-137
0.004
3
7mer
1160-1187
0.004
1
6mer
296-319
0.002
0
LINC00475
hsa-miR-34a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416438
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-95
0.016
0
6mer
487-514
0.006
0
6mer
68-89
0.004
0
XLOC_000111
hsa-miR-34a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000873
Biotype: transcript isomorph
Gene id: XLOC_000111
Gene Name: XLOC_000111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-401
0.017
1
7mer
947-969
0.006
1
6mer
474-497
0.002
0
6mer
1081-1104
0.001
0
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