LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RBMS3-AS1
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414547
Biotype: antisense
Gene id: ENSG00000235593
Gene Name: RBMS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-235
0.017
2
7mer
43-61
0.009
0
XLOC_012592
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025784
Biotype: transcript isomorph
Gene id: XLOC_012592
Gene Name: XLOC_012592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-193
0.018
1
8mer
1281-1300
0.005
Not Conserved
6mer
2386-2409
0.004
1
RP11-17G12.2
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540410
Biotype: antisense
Gene id: ENSG00000256897
Gene Name: RP11-17G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-460
0.020
2
6mer
6-24
0.007
2
TTC28-AS1
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540665
Biotype: processed_transcript
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
733-753
0.019
1
6mer
127-152
0.003
0
6mer
203-229
0.003
0
6mer
473-494
0.002
6
LINC01340
hsa-miR-34a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504012
Biotype: lincRNA
Gene id: ENSG00000250331
Gene Name: LINC01340
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-30
0.019
3
6mer
683-710
0.008
2
RP11-279F6.1
hsa-miR-34a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558633
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-477
0.027
1
XLOC_005586
hsa-miR-34a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012054
Biotype: transcript isomorph
Gene id: XLOC_005586
Gene Name: XLOC_005586
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-274
0.021
1
6mer
214-233
0.005
1
RP11-615I2.6
hsa-miR-34a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612545
Biotype: lincRNA
Gene id: ENSG00000275383
Gene Name: RP11-615I2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2059-2077
0.014
0
7mer
2360-2376
0.008
0
6mer
684-703
0.003
1
6mer
1493-1503
0.002
0
RP5-893G23.1
hsa-miR-34a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441046
Biotype: lincRNA
Gene id: ENSG00000233372
Gene Name: RP5-893G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-406
0.027
1
RP11-12A2.3
hsa-miR-34a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454788
Biotype: lincRNA
Gene id: ENSG00000238099
Gene Name: RP11-12A2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-165
0.027
2
CTD-2561J22.5
hsa-miR-34a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596705
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
521-540
0.027
0
XLOC_014347
hsa-miR-34a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029677
Biotype: transcript isomorph
Gene id: XLOC_014347
Gene Name: XLOC_014347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-334
0.027
1
RP11-727F15.9
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535817
Biotype: antisense
Gene id: ENSG00000256690
Gene Name: RP11-727F15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-426
0.023
7
6mer
409-431
0.003
4
AC009505.2
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427050
Biotype: antisense
Gene id: ENSG00000235522
Gene Name: AC009505.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-245
0.021
1
6mer
541-561
0.006
10
CTD-2545M3.2
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598194
Biotype: antisense
Gene id: ENSG00000268854
Gene Name: CTD-2545M3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-356
0.023
2
8mer+mismatch
312-337
0.004
1
AC010132.10
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433315
Biotype: lincRNA
Gene id: ENSG00000231539
Gene Name: AC010132.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-509
0.027
0
LINC01346
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412674
Biotype: lincRNA
Gene id: ENSG00000233304
Gene Name: LINC01346
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-523
0.022
1
6mer
2760-2777
0.002
1
6mer
2565-2584
0.002
Not Conserved
6mer
1441-1463
0.001
0
MGC15885
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560347
Biotype: antisense
Gene id: ENSG00000259458
Gene Name: MGC15885
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
899-922
0.027
2
AP001630.5
hsa-miR-34a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000428410
Biotype: antisense
Gene id: ENSG00000224100
Gene Name: AP001630.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-131
0.023
0
6mer
58-70
0.004
Not Conserved
RP11-417B4.2
hsa-miR-34a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423942
Biotype: antisense
Gene id: ENSG00000230826
Gene Name: RP11-417B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-618
0.027
4
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