LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-64B16.4
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535921
Biotype: antisense
Gene id: ENSG00000256609
Gene Name: RP11-64B16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
178-204
0.022
1
6mer
51-78
0.005
5
C21orf67
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000397841
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-549
0.015
0
8mer
1709-1733
0.005
0
7mer
928-951
0.002
0
6mer
642-658
0.002
0
6mer
1558-1571
0.002
1
6mer
724-737
0.001
0
XLOC_009060
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019230
Biotype: transcript isomorph
Gene id: XLOC_009060
Gene Name: XLOC_009060
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
819-842
0.024
0
6mer
1147-1173
0.003
1
GYG2-AS1
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445107
Biotype: antisense
Gene id: ENSG00000235483
Gene Name: GYG2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-150
0.022
4
6mer
230-243
0.006
1
CTD-2170G1.2
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506550
Biotype: lincRNA
Gene id: ENSG00000251575
Gene Name: CTD-2170G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-310
0.019
0
6mer
55-73
0.008
8
XLOC_008883
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
694-713
0.015
2
6mer
463-485
0.005
2
6mer
452-472
0.003
1
6mer
390-404
0.002
1
6mer
356-380
0.002
0
XLOC_000175
hsa-miR-34a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000929
Biotype: transcript isomorph
Gene id: XLOC_000175
Gene Name: XLOC_000175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1188-1206
0.011
2
7mer
514-534
0.006
1
6mer
124-148
0.004
1
7mer
733-755
0.004
0
6mer
265-287
0.003
1
XLOC_006870
hsa-miR-34a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014794
Biotype: transcript isomorph
Gene id: XLOC_006870
Gene Name: XLOC_006870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1979-2000
0.022
2
6mer
251-277
0.005
1
RP11-40H20.4
hsa-miR-34a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425205
Biotype: antisense
Gene id: ENSG00000224311
Gene Name: RP11-40H20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-195
0.027
0
LINC01164
hsa-miR-34a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000341866
Biotype: lincRNA
Gene id: ENSG00000189275
Gene Name: LINC01164
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1078-1105
0.015
1
7mer
2962-2987
0.010
1
6mer
2743-2755
0.002
0
RP11-642D21.1
hsa-miR-34a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519805
Biotype: sense_intronic
Gene id: ENSG00000254141
Gene Name: RP11-642D21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-669
0.027
1
RP4-761J14.10
hsa-miR-34a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602431
Biotype: lincRNA
Gene id: ENSG00000269892
Gene Name: RP4-761J14.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-93
0.017
2
6mer
201-226
0.005
1
6mer
543-561
0.005
1
RP11-197K3.1
hsa-miR-34a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465249
Biotype: lincRNA
Gene id: ENSG00000242290
Gene Name: RP11-197K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-250
0.027
4
RP3-322G13.7
hsa-miR-34a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442884
Biotype: antisense
Gene id: ENSG00000234832
Gene Name: RP3-322G13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-526
0.012
1
7mer
562-588
0.009
1
6mer
737-757
0.003
0
6mer
351-364
0.003
0
CTD-2600O9.2
hsa-miR-34a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613495
Biotype: antisense
Gene id: ENSG00000276166
Gene Name: CTD-2600O9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-151
0.013
0
9mer
339-357
0.012
0
6mer
194-219
0.002
1
RP13-225O21.2
hsa-miR-34a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453199
Biotype: antisense
Gene id: ENSG00000228487
Gene Name: RP13-225O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10-27
0.027
1
RP11-452F19.3
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441676
Biotype: lincRNA
Gene id: ENSG00000228106
Gene Name: RP11-452F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-148
0.027
1
XLOC_009447
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019644
Biotype: transcript isomorph
Gene id: XLOC_009447
Gene Name: XLOC_009447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2122-2142
0.011
0
7mer
481-507
0.007
0
7mer
1603-1624
0.004
0
6mer
2801-2825
0.003
1
6mer
1128-1154
0.002
0
RP11-267L5.1
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519248
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-407
0.027
Not Conserved
LINC00910
hsa-miR-34a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587874
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-128
0.027
1
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