LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-297M9.2
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-36
0.013
10
8mer
2280-2302
0.012
2
6mer
855-876
0.002
1
RP11-856M7.1
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562202
Biotype: antisense
Gene id: ENSG00000260779
Gene Name: RP11-856M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3394-3417
0.015
1
7mer
2359-2383
0.005
0
6mer
275-302
0.004
0
6mer
730-753
0.002
0
6mer
3412-3439
0.002
0
RP11-152L20.3
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561674
Biotype: antisense
Gene id: ENSG00000260661
Gene Name: RP11-152L20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
818-844
0.027
Not Conserved
TRPM2-AS
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-751
0.012
0
7mer
541-568
0.012
0
6mer
1683-1708
0.004
1
RP11-436K8.1
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423403
Biotype: lincRNA
Gene id: ENSG00000231252
Gene Name: RP11-436K8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2215-2232
0.026
3
6mer
915-934
0.002
0
RP1-122P22.4
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598007
Biotype: lincRNA
Gene id: ENSG00000268628
Gene Name: RP1-122P22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1510-1528
0.027
1
XLOC_004394
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009404
Biotype: transcript isomorph
Gene id: XLOC_004394
Gene Name: XLOC_004394
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.020
1
6mer
356-383
0.004
1
6mer
590-610
0.004
1
XLOC_003228
hsa-miR-34a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007245
Biotype: transcript isomorph
Gene id: XLOC_003228
Gene Name: XLOC_003228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2094-2112
0.012
0
6mer
3172-3188
0.005
3
6mer
2613-2635
0.003
3
6mer
3311-3327
0.003
1
6mer
3254-3279
0.002
1
6mer
2750-2764
0.002
1
RP3-368B9.2
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505702
Biotype: lincRNA
Gene id: ENSG00000250681
Gene Name: RP3-368B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-239
0.027
0
LIMS3-LOC440895
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027145.2
Biotype: sense
Gene id: NR_027145.2 (gene)
Gene Name: LIMS3-LOC440895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-107
0.013
0
8mer
2070-2096
0.004
0
6mer
241-259
0.003
Not Conserved
6mer
8-28
0.002
0
6mer
863-889
0.002
5
6mer
764-784
0.002
5
6mer
974-997
0.001
1
6mer
1020-1035
0.001
2
CACNA1C-IT3
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_046769.1
Biotype: sense
Gene id: NR_046769.1 (gene)
Gene Name: CACNA1C-IT3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-149
0.027
3
AC012613.2
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523176
Biotype: antisense
Gene id: ENSG00000253406
Gene Name: AC012613.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
780-801
0.015
6
8mer
3666-3691
0.012
1
XLOC_004849
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009284
Biotype: transcript isomorph
Gene id: XLOC_004849
Gene Name: XLOC_004849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1072-1090
0.025
Not Conserved
6mer
801-816
0.002
1
hsa-mir-1587
hsa-miR-34a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000562814
Biotype: lincRNA
Gene id: ENSG00000261435
Gene Name: hsa-mir-1587
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-237
0.015
2
8mer
160-174
0.010
1
6mer
46-71
0.003
0
RP11-212P7.2
hsa-miR-34a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608477
Biotype: lincRNA
Gene id: ENSG00000273270
Gene Name: RP11-212P7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-327
0.011
0
6mer
143-166
0.006
3
8mer
872-893
0.004
0
6mer
7014-7038
0.003
0
7mer
5746-5761
0.002
0
6mer
1304-1322
0.002
1
6mer
5539-5565
0.001
Not Conserved
CTD-2527I21.15
hsa-miR-34a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616460
Biotype: lincRNA
Gene id: ENSG00000179066
Gene Name: CTD-2527I21.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1223-1237
0.020
1
8mer
513-529
0.003
0
6mer
367-388
0.002
1
6mer
500-523
0.002
1
LINC01272
hsa-miR-34a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622604
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-252
0.018
2
8mer
530-550
0.007
1
6mer
791-809
0.003
1
ARL2-SNX15
hsa-miR-34a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037650.1
Biotype: sense
Gene id: NR_037650.1 (gene)
Gene Name: ARL2-SNX15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1707-1726
0.021
8
7mer
379-402
0.004
4
6mer
1058-1079
0.002
4
XLOC_000899
hsa-miR-34a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001557
Biotype: transcript isomorph
Gene id: XLOC_000899
Gene Name: XLOC_000899
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-330
0.014
2
7mer
181-198
0.008
Not Conserved
6mer
161-186
0.005
3
RP11-114M1.1
hsa-miR-34a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423466
Biotype: lincRNA
Gene id: ENSG00000228561
Gene Name: RP11-114M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-132
0.023
1
6mer
484-498
0.004
0
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