LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
AC093690.1
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418963
Biotype: antisense
Gene id: ENSG00000223522
Gene Name: AC093690.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-233
0.022
1
7mer
546-562
0.006
1
LOC101926935
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2732-2753
0.015
0
7mer
2542-2563
0.005
0
6mer
4867-4880
0.004
0
6mer
2606-2630
0.003
0
XLOC_003202
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006580
Biotype: transcript isomorph
Gene id: XLOC_003202
Gene Name: XLOC_003202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-430
0.014
1
7mer
3693-3718
0.008
0
6mer
2359-2382
0.003
3
6mer
731-748
0.002
1
6mer
2704-2724
0.001
1
CTD-2636A23.2
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1266-1292
0.016
2
7mer
812-832
0.007
0
6mer
610-634
0.005
2
RP11-142C4.6
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033853.2
Biotype: antisense
Gene id: NR_033853.2 (gene)
Gene Name: RP11-142C4.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-65
0.024
1
6mer
1308-1324
0.001
0
6mer
1099-1112
0.001
0
6mer
982-1004
0.001
0
AC008079.10
hsa-miR-34a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
10767-10785
0.006
8
8mer
4433-4458
0.005
1
7mer
235-249
0.004
0
7mer
18758-18783
0.003
1
6mer
19410-19437
0.002
3
6mer
2831-2852
0.002
0
6mer
6294-6320
0.001
1
6mer
14063-14079
0.001
2
6mer
13365-13383
0.001
1
6mer
14661-14688
0.001
0
7mer
4345-4368
0.001
0
6mer
4882-4901
0.001
1
RP11-626H12.3
hsa-miR-34a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528316
Biotype: lincRNA
Gene id: ENSG00000248844
Gene Name: RP11-626H12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-95
0.028
0
RP11-698F20.3
hsa-miR-34a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555643
Biotype: lincRNA
Gene id: ENSG00000258050
Gene Name: RP11-698F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-217
0.028
1
STAG3L5P-PVRIG2P-PILRB
hsa-miR-34a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3093-3112
0.018
Not Conserved
6mer
443-461
0.006
3
6mer
1232-1250
0.003
4
6mer
2363-2386
0.001
0
CTD-2303H24.2
hsa-miR-34a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581595
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1284-1308
0.015
Not Conserved
6mer
96-115
0.011
3
6mer
862-881
0.002
0
C9orf106
hsa-miR-34a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000316786
Biotype: lincRNA
Gene id: ENSG00000179082
Gene Name: C9orf106
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-590
0.019
2
7mer
776-797
0.003
0
7mer
2344-2362
0.002
0
6mer
2330-2349
0.002
Not Conserved
6mer
2207-2220
0.001
1
CTD-2501M5.1
hsa-miR-34a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519695
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-418
0.028
Not Conserved
CTD-2501M5.1
hsa-miR-34a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524275
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-418
0.028
Not Conserved
XLOC_001317
hsa-miR-34a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003544
Biotype: transcript isomorph
Gene id: XLOC_001317
Gene Name: XLOC_001317
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-387
0.024
1
6mer
160-184
0.003
1
RP11-96C23.5
hsa-miR-34a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-324
0.015
0
8mer
1413-1432
0.007
1
7mer
164-186
0.005
1
LINC00523
hsa-miR-34a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556697
Biotype: lincRNA
Gene id: ENSG00000196273
Gene Name: LINC00523
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1019-1042
0.022
1
6mer
175-195
0.003
1
6mer
406-418
0.002
0
XLOC_010150
hsa-miR-34a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020868
Biotype: transcript isomorph
Gene id: XLOC_010150
Gene Name: XLOC_010150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-334
0.027
0
AC008940.1
hsa-miR-34a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000438117
Biotype: lincRNA
Gene id: ENSG00000228650
Gene Name: AC008940.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.020
1
6mer
356-383
0.004
1
6mer
590-610
0.004
1
GS1-600G8.5
hsa-miR-34a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000443965
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-84
0.024
3
6mer
869-891
0.004
0
CTB-158E9.1
hsa-miR-34a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518984
Biotype: lincRNA
Gene id: ENSG00000254293
Gene Name: CTB-158E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1693-1704
0.023
1
6mer
1304-1321
0.004
5
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