LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-1007I13.4
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000509345
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-349
0.023
2
6mer
610-629
0.003
1
6mer
455-478
0.002
Not Conserved
XLOC_011088
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022379
Biotype: transcript isomorph
Gene id: XLOC_011088
Gene Name: XLOC_011088
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1308-1335
0.026
Not Conserved
6mer
575-586
0.003
0
RP4-673M15.1
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608450
Biotype: antisense
Gene id: ENSG00000272768
Gene Name: RP4-673M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1402
0.028
1
TPT1-AS1
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434849
Biotype: retained_intron
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-437
0.027
1
6mer
1923-1944
0.001
Not Conserved
AC009120.5
hsa-miR-34a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564455
Biotype: lincRNA
Gene id: ENSG00000260884
Gene Name: AC009120.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-360
0.028
1
LINC00458
hsa-miR-34a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606706
Biotype: lincRNA
Gene id: ENSG00000234787
Gene Name: LINC00458
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-517
0.028
Not Conserved
RP11-347C18.3
hsa-miR-34a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523905
Biotype: sense_intronic
Gene id: ENSG00000253878
Gene Name: RP11-347C18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-663
0.022
0
7mer
192-211
0.006
0
XLOC_001809
hsa-miR-34a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003987
Biotype: transcript isomorph
Gene id: XLOC_001809
Gene Name: XLOC_001809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2339-2359
0.013
2
8mer
2553-2574
0.009
1
7mer
1428-1454
0.004
Not Conserved
6mer
2742-2762
0.002
1
C16orf3
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000408886
Biotype: antisense
Gene id: ENSG00000221819
Gene Name: C16orf3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.024
1
7mer
215-236
0.004
0
C21orf67
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615847
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-549
0.017
0
6mer
1558-1571
0.004
1
7mer
928-951
0.003
0
6mer
642-658
0.002
0
6mer
724-737
0.002
0
AC013402.5
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456999
Biotype: lincRNA
Gene id: ENSG00000230690
Gene Name: AC013402.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-391
0.023
0
6mer
448-464
0.005
5
RP3-522J7.6
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565177
Biotype: lincRNA
Gene id: ENSG00000260613
Gene Name: RP3-522J7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1397-1423
0.018
Not Conserved
6mer
492-511
0.007
3
6mer
978-1002
0.002
0
6mer
961-980
0.001
1
XLOC_006460
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1526-1542
0.015
1
6mer
319-335
0.013
1
RP11-63M22.2
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569274
Biotype: antisense
Gene id: ENSG00000260465
Gene Name: RP11-63M22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1557-1572
0.014
1
8mer+wobble
1123-1150
0.008
1
6mer
1525-1545
0.005
3
DLGAP1-AS4
hsa-miR-34a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582054
Biotype: antisense
Gene id: ENSG00000263878
Gene Name: DLGAP1-AS4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-403
0.019
2
6mer
60-85
0.009
5
RP11-357H14.17
hsa-miR-34a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433510
Biotype: lincRNA
Gene id: ENSG00000272763
Gene Name: RP11-357H14.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Colon Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1011
0.014
2
8mer
400-417
0.014
2
XLOC_009726
hsa-miR-34a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020397
Biotype: transcript isomorph
Gene id: XLOC_009726
Gene Name: XLOC_009726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-109
0.028
1
XLOC_004362
hsa-miR-34a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
931-953
0.021
1
6mer
267-288
0.004
1
6mer
3006-3026
0.002
1
6mer
5419-5438
0.001
0
LINC01467
hsa-miR-34a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554211
Biotype: lincRNA
Gene id: ENSG00000258977
Gene Name: LINC01467
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
972-999
0.025
Not Conserved
6mer
575-586
0.003
0
RP11-638I2.4
hsa-miR-34a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554537
Biotype: antisense
Gene id: ENSG00000258982
Gene Name: RP11-638I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-253
0.026
0
6mer
95-116
0.002
Not Conserved
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