LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
TUSC7
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477539
Biotype: antisense
Gene id: ENSG00000243197
Gene Name: TUSC7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1709-1734
0.027
0
6mer
867-891
0.002
2
CTD-2527I21.15
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000313865
Biotype: lincRNA
Gene id: ENSG00000179066
Gene Name: CTD-2527I21.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1223-1237
0.021
1
8mer
513-529
0.003
0
6mer
367-388
0.003
1
6mer
500-523
0.002
1
XLOC_011325
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023477
Biotype: transcript isomorph
Gene id: XLOC_011325
Gene Name: XLOC_011325
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-170
0.025
2
6mer
35-54
0.003
0
LINC01272
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000422459
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-260
0.017
2
8mer
538-558
0.007
1
6mer
799-817
0.004
1
XLOC_001323
hsa-miR-34a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004677
Biotype: transcript isomorph
Gene id: XLOC_001323
Gene Name: XLOC_001323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1274-1298
0.029
1
C1orf132
hsa-miR-34a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10541-10560
0.011
1
8mer
9392-9418
0.004
1
7mer
5976-5997
0.004
3
7mer
4456-4475
0.002
2
6mer
9205-9225
0.001
1
6mer
11015-11042
0.001
1
6mer
12563-12577
0.001
3
6mer
4701-4717
0.001
Not Conserved
6mer
3544-3563
0.001
0
6mer
10833-10850
0.001
1
6mer
4583-4603
0.001
2
6mer
10531-10546
0.000
4
AC010731.4
hsa-miR-34a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441223
Biotype: lincRNA
Gene id: ENSG00000235118
Gene Name: AC010731.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-772
0.024
3
6mer
94-110
0.005
3
RP3-417O22.3
hsa-miR-34a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442184
Biotype: antisense
Gene id: ENSG00000224384
Gene Name: RP3-417O22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-306
0.023
4
6mer
314-339
0.006
1
RP11-410D17.2
hsa-miR-34a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500117
Biotype: lincRNA
Gene id: ENSG00000245768
Gene Name: RP11-410D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2124-2145
0.017
6
7mer
1416-1443
0.011
0
LINC00365
hsa-miR-34a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000432770
Biotype: lincRNA
Gene id: ENSG00000224511
Gene Name: LINC00365
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-115
0.025
1
7mer
440-461
0.004
Not Conserved
FLJ16779
hsa-miR-34a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612722
Biotype: antisense
Gene id: ENSG00000275620
Gene Name: FLJ16779
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6841-6862
0.014
0
7mer
7318-7343
0.006
0
7mer
4238-4262
0.002
0
6mer
7246-7267
0.001
0
6mer
4131-4157
0.001
1
7mer
1446-1468
0.001
1
6mer
7184-7206
0.001
0
6mer
1105-1125
0.001
0
6mer
1408-1426
0.001
1
6mer
2224-2250
0.001
0
XLOC_004142
hsa-miR-34a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008637
Biotype: transcript isomorph
Gene id: XLOC_004142
Gene Name: XLOC_004142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-393
0.025
0
6mer
345-369
0.003
0
KB-1183D5.13
hsa-miR-34a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000416405
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1268-1291
0.026
0
6mer
782-806
0.003
0
RP11-360K13.1
hsa-miR-34a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-91
0.015
Not Conserved
7mer
764-785
0.011
1
6mer
985-1009
0.003
3
PRKAR2A-AS1
hsa-miR-34a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000416209
Biotype: antisense
Gene id: ENSG00000224424
Gene Name: PRKAR2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3231-3256
0.020
4
6mer
382-397
0.003
2
6mer
2695-2721
0.002
1
6mer
2630-2648
0.002
1
6mer
2426-2444
0.001
1
6mer
786-799
0.001
0
TTC39A-AS1
hsa-miR-34a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000568425
Biotype: antisense
Gene id: ENSG00000261664
Gene Name: TTC39A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-341
0.028
1
RP5-998N21.4
hsa-miR-34a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415338
Biotype: lincRNA
Gene id: ENSG00000234571
Gene Name: RP5-998N21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1445-1466
0.024
1
6mer
2234-2254
0.002
3
6mer
2106-2131
0.002
4
TUG1
hsa-miR-34a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569384
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-376
0.028
7
XLOC_008678
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018395
Biotype: transcript isomorph
Gene id: XLOC_008678
Gene Name: XLOC_008678
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
112-136
0.015
0
6mer
588-608
0.010
0
7mer
407-433
0.003
Not Conserved
XLOC_005559
hsa-miR-34a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012631
Biotype: transcript isomorph
Gene id: XLOC_005559
Gene Name: XLOC_005559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-606
0.013
2
8mer
2986-3006
0.006
0
6mer
217-241
0.004
1
6mer
2857-2880
0.003
1
6mer
1680-1703
0.001
1
7mer
2600-2620
0.001
0
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