LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000036
hsa-miR-34a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001929
Biotype: transcript isomorph
Gene id: XLOC_000036
Gene Name: XLOC_000036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-479
0.026
1
6mer
156-182
0.003
0
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-34a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000579700
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-538
0.021
3
8mer+wobble
656-676
0.004
Not Conserved
6mer
183-208
0.003
1
6mer
742-766
0.002
0
CTD-2529O21.2
hsa-miR-34a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570952
Biotype: antisense
Gene id: ENSG00000261978
Gene Name: CTD-2529O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-311
0.029
0
AC005154.6
hsa-miR-34a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454922
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-282
0.024
1
6mer
883-905
0.005
1
F11-AS1
hsa-miR-34a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508110
Biotype: antisense
Gene id: ENSG00000251165
Gene Name: F11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1329-1354
0.021
1
6mer
157-176
0.004
2
6mer
1109-1134
0.004
0
AP000997.2
hsa-miR-34a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-223
0.016
Not Conserved
7mer
8053-8068
0.008
0
6mer
765-790
0.003
3
7mer
6090-6109
0.002
1
RP11-61I13.3
hsa-miR-34a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2765-2784
0.008
6
7mer
217-233
0.006
1
7mer
772-794
0.005
0
7mer
2505-2531
0.003
1
7mer
1933-1949
0.002
1
6mer
171-198
0.002
2
6mer
495-517
0.002
1
6mer
1488-1515
0.001
1
SNAI3-AS1
hsa-miR-34a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565633
Biotype: antisense
Gene id: ENSG00000260630
Gene Name: SNAI3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-413
0.014
1
8mer
589-610
0.010
0
6mer
483-507
0.003
0
6mer
514-539
0.003
1
XLOC_004844
hsa-miR-34a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009283
Biotype: transcript isomorph
Gene id: XLOC_004844
Gene Name: XLOC_004844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
268-294
0.019
0
6mer
39-57
0.010
8
RP11-74J13.8
hsa-miR-34a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619407
Biotype: antisense
Gene id: ENSG00000278390
Gene Name: RP11-74J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-394
0.019
1
7mer
532-544
0.010
0
CTD-2501M5.1
hsa-miR-34a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519005
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-372
0.029
Not Conserved
XLOC_001036
hsa-miR-34a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002486
Biotype: transcript isomorph
Gene id: XLOC_001036
Gene Name: XLOC_001036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-470
0.025
4
6mer
23-37
0.004
1
AC226119.5
hsa-miR-34a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514073
Biotype: processed_transcript
Gene id: ENSG00000253917
Gene Name: AC226119.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-296
0.026
1
6mer
371-387
0.002
0
XLOC_006898
hsa-miR-34a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014543
Biotype: transcript isomorph
Gene id: XLOC_006898
Gene Name: XLOC_006898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1707-1720
0.016
1
8mer
1973-1994
0.013
2
RP11-1007I13.4
hsa-miR-34a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000583636
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-349
0.023
2
6mer
610-629
0.003
1
6mer
455-478
0.002
Not Conserved
CTD-2233C11.2
hsa-miR-34a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511579
Biotype: lincRNA
Gene id: ENSG00000250583
Gene Name: CTD-2233C11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-115
0.029
Not Conserved
AC004623.2
hsa-miR-34a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587059
Biotype: antisense
Gene id: ENSG00000267755
Gene Name: AC004623.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-28
0.029
0
XLOC_009206
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019382
Biotype: transcript isomorph
Gene id: XLOC_009206
Gene Name: XLOC_009206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-257
0.029
Not Conserved
XLOC_009458
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019653
Biotype: transcript isomorph
Gene id: XLOC_009458
Gene Name: XLOC_009458
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-173
0.027
0
6mer
496-518
0.002
0
XLOC_007091
hsa-miR-34a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015017
Biotype: transcript isomorph
Gene id: XLOC_007091
Gene Name: XLOC_007091
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-413
0.029
0
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