LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-618L22.1
hsa-miR-34a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621214
Biotype: lincRNA
Gene id: ENSG00000274723
Gene Name: RP11-618L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
714-729
0.030
1
RP4-697P8.3
hsa-miR-34a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448859
Biotype: lincRNA
Gene id: ENSG00000232900
Gene Name: RP4-697P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1933-1946
0.030
0
BLOC1S5-TXNDC5
hsa-miR-34a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2917-2940
0.030
7
RP11-677M14.7
hsa-miR-34a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529392
Biotype: antisense
Gene id: ENSG00000245498
Gene Name: RP11-677M14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2616-2639
0.026
0
7mer
1117-1128
0.003
Not Conserved
MIR4313
hsa-miR-34a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1267-1287
0.019
0
6mer
552-575
0.010
1
RP11-383H13.1
hsa-miR-34a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518916
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
564-590
0.030
1
XLOC_011157
hsa-miR-34a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1641-1657
0.010
0
6mer
526-538
0.004
0
6mer
743-765
0.003
0
6mer
1036-1056
0.002
0
6mer
1413-1434
0.002
0
6mer
1809-1828
0.002
0
6mer
2747-2766
0.002
Not Conserved
6mer
2587-2607
0.001
Not Conserved
6mer
2409-2434
0.001
Not Conserved
6mer
2446-2463
0.001
Not Conserved
LOC100131825
hsa-miR-34a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037870.1
Biotype: antisense
Gene id: NR_037870.1 (gene)
Gene Name: LOC100131825
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2059-2077
0.018
2
8mer
936-958
0.008
2
6mer
2383-2399
0.003
7
LINC00094
hsa-miR-34a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4343-4368
0.017
Not Conserved
7mer
4877-4895
0.006
0
8mer+wobble
869-891
0.002
1
7mer
2187-2210
0.001
Not Conserved
6mer
2108-2134
0.001
1
6mer
3491-3507
0.001
1
6mer
2472-2492
0.001
1
XLOC_008705
hsa-miR-34a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017683
Biotype: transcript isomorph
Gene id: XLOC_008705
Gene Name: XLOC_008705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1591-1616
0.017
1
7mer
1013-1036
0.008
1
7mer
935-955
0.003
1
6mer
1449-1472
0.002
0
RP11-575L7.4
hsa-miR-34a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000589233
Biotype: antisense
Gene id: ENSG00000231616
Gene Name: RP11-575L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-210
0.026
2
6mer
1081-1099
0.004
2
CTC-479C5.6
hsa-miR-34a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574912
Biotype: antisense
Gene id: ENSG00000263201
Gene Name: CTC-479C5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-303
0.022
1
6mer
877-902
0.005
7
6mer
964-989
0.003
1
NR2F1-AS1
hsa-miR-34a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607112
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-116
0.022
1
6mer
217-242
0.007
3
XLOC_004621
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010155
Biotype: transcript isomorph
Gene id: XLOC_004621
Gene Name: XLOC_004621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-539
0.016
1
6mer
418-444
0.008
5
6mer
339-358
0.004
0
RP3-388M5.9
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564696
Biotype: antisense
Gene id: ENSG00000261251
Gene Name: RP3-388M5.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
601-625
0.021
1
6mer
1343-1360
0.008
2
NR2F1-AS1
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607797
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-570
0.011
2
8mer
2143-2165
0.007
1
6mer
558-580
0.006
5
6mer
2243-2268
0.002
1
6mer
1133-1143
0.002
0
6mer
984-1002
0.001
2
SPATA41
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560282
Biotype: lincRNA
Gene id: ENSG00000189419
Gene Name: SPATA41
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1563-1587
0.024
1
6mer
494-506
0.004
2
6mer
1161-1186
0.002
0
LRP4-AS1
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502049
Biotype: antisense
Gene id: ENSG00000247675
Gene Name: LRP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-632
0.024
8
6mer
1387-1405
0.006
6
CTB-131B5.5
hsa-miR-34a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
120-146
0.022
1
6mer
358-376
0.002
2
6mer
2670-2683
0.002
1
8mer
2717-2737
0.002
0
6mer
1523-1547
0.001
0
RP11-279F6.1
hsa-miR-34a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558781
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-239
0.029
1
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