LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
SDCBP2-AS1
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000446423
Biotype: antisense
Gene id: ENSG00000234684
Gene Name: SDCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1223-1245
0.025
1
8mer
564-579
0.005
0
LOC100506526
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105000.1
Biotype: lincRNA
Gene id: NR_105000.1 (gene)
Gene Name: LOC100506526
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
268-294
0.019
0
6mer
39-57
0.011
8
LINC00595
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000459633
Biotype: lincRNA
Gene id: ENSG00000227136
Gene Name: LINC00595
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-295
0.030
1
CTD-3074O7.5
hsa-miR-34a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602951
Biotype: antisense
Gene id: ENSG00000255517
Gene Name: CTD-3074O7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-70
0.028
4
6mer
150-165
0.002
0
RP11-818F20.5
hsa-miR-34a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549807
Biotype: antisense
Gene id: ENSG00000257732
Gene Name: RP11-818F20.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-297
0.026
Not Conserved
6mer
557-580
0.004
Not Conserved
XLOC_010383
hsa-miR-34a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
913-924
0.017
0
6mer
243-260
0.013
0
ZBED3-AS1
hsa-miR-34a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512213
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-595
0.030
1
NPHP3-ACAD11
hsa-miR-34a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2382-2400
0.015
12
8mer
818-844
0.006
1
7mer
2730-2747
0.004
0
6mer
3357-3379
0.003
8
6mer
1347-1368
0.002
5
6mer
4121-4141
0.002
5
AC016722.4
hsa-miR-34a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429761
Biotype: antisense
Gene id: ENSG00000228925
Gene Name: AC016722.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-288
0.008
2
7mer
1546-1572
0.007
1
7mer
167-183
0.006
1
8mer
938-958
0.005
0
6mer
167-178
0.004
1
RP11-266N13.2
hsa-miR-34a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500224
Biotype: antisense
Gene id: ENSG00000247345
Gene Name: RP11-266N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-566
0.025
3
7mer
216-235
0.005
1
RP11-563E2.2
hsa-miR-34a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503478
Biotype: antisense
Gene id: ENSG00000250027
Gene Name: RP11-563E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-436
0.030
1
RP11-727F15.9
hsa-miR-34a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535867
Biotype: antisense
Gene id: ENSG00000256690
Gene Name: RP11-727F15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-542
0.026
7
6mer
525-547
0.004
4
RP11-739N10.1
hsa-miR-34a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584546
Biotype: lincRNA
Gene id: ENSG00000264151
Gene Name: RP11-739N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1205-1231
0.027
1
6mer
826-842
0.003
1
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-34a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584900
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-691
0.019
3
6mer
1586-1605
0.005
0
8mer+wobble
809-829
0.003
Not Conserved
6mer
336-361
0.003
1
6mer
895-919
0.001
0
CTA-414D7.1
hsa-miR-34a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8200-8218
0.007
1
8mer
2053-2077
0.006
0
6mer
299-318
0.003
Not Conserved
7mer
1929-1941
0.003
1
6mer
678-694
0.003
1
6mer
921-940
0.002
0
7mer
6853-6867
0.002
0
7mer
8797-8822
0.001
0
6mer
5460-5477
0.001
0
6mer
9850-9876
0.001
1
6mer
7452-7477
0.001
1
AC004623.2
hsa-miR-34a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589673
Biotype: antisense
Gene id: ENSG00000267755
Gene Name: AC004623.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-28
0.027
0
6mer
337-356
0.003
0
XLOC_000008
hsa-miR-34a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001909
Biotype: transcript isomorph
Gene id: XLOC_000008
Gene Name: XLOC_000008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1278-1301
0.019
0
8mer
188-214
0.007
Not Conserved
6mer
652-673
0.002
Not Conserved
6mer
828-853
0.002
Not Conserved
RP11-425A6.5
hsa-miR-34a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609313
Biotype: antisense
Gene id: ENSG00000273312
Gene Name: RP11-425A6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1531-1546
0.022
1
7mer
1022-1040
0.007
1
RP5-890E16.4
hsa-miR-34a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583349
Biotype: antisense
Gene id: ENSG00000266341
Gene Name: RP5-890E16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-136
0.030
3
RP11-362F19.1
hsa-miR-34a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-148
0.028
1
6mer
903-929
0.002
1
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