LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
SLC25A25-AS1
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418747
Biotype: antisense
Gene id: ENSG00000234771
Gene Name: SLC25A25-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-376
0.012
4
7mer
6031-6052
0.007
1
6mer
6205-6224
0.005
3
6mer
5558-5575
0.003
6
7mer
1895-1915
0.001
0
6mer
1278-1299
0.001
0
6mer
4791-4810
0.000
0
RP11-305F18.1
hsa-miR-34a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000439992
Biotype: lincRNA
Gene id: ENSG00000233928
Gene Name: RP11-305F18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-235
0.027
0
6mer
268-286
0.002
0
6mer
281-307
0.001
0
RP11-744I24.3
hsa-miR-34a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000565449
Biotype: lincRNA
Gene id: ENSG00000261797
Gene Name: RP11-744I24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-53
0.030
0
RP11-65L3.2
hsa-miR-34a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603415
Biotype: antisense
Gene id: ENSG00000270277
Gene Name: RP11-65L3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-501
0.027
3
6mer
711-732
0.003
7
LINC01477
hsa-miR-34a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566101
Biotype: lincRNA
Gene id: ENSG00000261715
Gene Name: LINC01477
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-752
0.022
5
6mer
257-276
0.003
Not Conserved
6mer
857-877
0.003
1
6mer
824-839
0.003
0
XLOC_012665
hsa-miR-34a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026191
Biotype: transcript isomorph
Gene id: XLOC_012665
Gene Name: XLOC_012665
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-752
0.022
5
6mer
257-276
0.003
Not Conserved
6mer
857-877
0.003
1
6mer
824-839
0.003
0
RNASEH1-AS1
hsa-miR-34a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038430.1
Biotype: antisense
Gene id: NR_038430.1 (gene)
Gene Name: RNASEH1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1319-1343
0.030
1
LINC01252
hsa-miR-34a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499291
Biotype: lincRNA
Gene id: ENSG00000247157
Gene Name: LINC01252
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-145
0.028
0
6mer
3151-3164
0.003
2
RP11-137H15.4
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619737
Biotype: lincRNA
Gene id: ENSG00000276008
Gene Name: RP11-137H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-401
0.030
1
CTA-929C8.9
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3526-3548
0.008
0
9mer
19854-19876
0.007
Not Conserved
7mer
24738-24763
0.005
0
7mer
2296-2318
0.004
1
6mer
11907-11927
0.002
0
6mer
18370-18390
0.001
1
6mer
6292-6314
0.001
1
6mer
17107-17125
0.001
0
7mer
19987-20010
0.001
Not Conserved
6mer
17140-17166
0.001
Not Conserved
6mer
20103-20128
0.000
0
CKMT2-AS1
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512287
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-52
0.025
1
6mer
288-311
0.005
6
CTD-3060P21.1
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574885
Biotype: antisense
Gene id: ENSG00000262884
Gene Name: CTD-3060P21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-201
0.020
1
7mer
1890-1908
0.008
1
6mer
794-810
0.002
2
LAMA5-AS1
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000477848
Biotype: antisense
Gene id: ENSG00000228812
Gene Name: LAMA5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-139
0.030
10
RP11-267L5.1
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507929
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-471
0.030
Not Conserved
RP11-554I8.2
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417112
Biotype: lincRNA
Gene id: ENSG00000223784
Gene Name: RP11-554I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-129
0.030
1
RP11-102N12.3
hsa-miR-34a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609937
Biotype: lincRNA
Gene id: ENSG00000273472
Gene Name: RP11-102N12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1169-1190
0.030
1
XLOC_013407
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027419
Biotype: transcript isomorph
Gene id: XLOC_013407
Gene Name: XLOC_013407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1130-1141
0.022
0
7mer
852-874
0.008
0
SEPT5-GP1BB
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-140
0.029
5
6mer
2508-2530
0.002
3
XLOC_008597
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018319
Biotype: transcript isomorph
Gene id: XLOC_008597
Gene Name: XLOC_008597
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-316
0.025
0
6mer
37-54
0.005
1
ERVK3-1
hsa-miR-34a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000413518
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1139-1156
0.025
1
6mer
157-181
0.003
0
6mer
95-121
0.002
0
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