LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP4-756G23.5
hsa-miR-34a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441316
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-814
0.019
4
7mer
672-695
0.012
7
RP11-404O13.1
hsa-miR-34a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442358
Biotype: lincRNA
Gene id: ENSG00000231666
Gene Name: RP11-404O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
526-553
0.031
2
XLOC_000184
hsa-miR-34a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000933
Biotype: transcript isomorph
Gene id: XLOC_000184
Gene Name: XLOC_000184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.031
0
SNAI3-AS1
hsa-miR-34a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563475
Biotype: antisense
Gene id: ENSG00000260630
Gene Name: SNAI3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1426
0.009
0
8mer
316-337
0.008
0
6mer
1819-1838
0.006
4
6mer
211-234
0.003
0
6mer
241-266
0.003
1
6mer
722-747
0.002
0
SNORA67
hsa-miR-34a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581621
Biotype: processed_transcript
Gene id: ENSG00000264772
Gene Name: SNORA67
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
161-187
0.007
10
7mer
2560-2581
0.004
2
6mer
2210-2221
0.003
9
8mer
3254-3273
0.003
1
7mer
3181-3207
0.002
3
8mer
3344-3363
0.002
1
6mer
4524-4542
0.002
0
6mer
3002-3020
0.001
1
7mer
3271-3297
0.001
1
6mer
3059-3077
0.001
5
6mer
2605-2629
0.001
3
6mer
1691-1716
0.001
2
6mer
3292-3312
0.001
0
RP11-456O19.5
hsa-miR-34a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589617
Biotype: lincRNA
Gene id: ENSG00000267399
Gene Name: RP11-456O19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-274
0.016
1
8mer
240-260
0.015
1
RP11-404O13.1
hsa-miR-34a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414848
Biotype: lincRNA
Gene id: ENSG00000231666
Gene Name: RP11-404O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
702-729
0.031
2
RP11-752D24.2
hsa-miR-34a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510351
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-50
0.025
1
7mer
2090-2104
0.003
0
6mer
1581-1604
0.002
1
XLOC_013278
hsa-miR-34a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1287-1312
0.031
0
XLOC_005414
hsa-miR-34a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011913
Biotype: transcript isomorph
Gene id: XLOC_005414
Gene Name: XLOC_005414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1032
0.026
1
6mer
108-121
0.002
Not Conserved
6mer
1345-1372
0.002
0
RP11-626H12.3
hsa-miR-34a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511013
Biotype: lincRNA
Gene id: ENSG00000248844
Gene Name: RP11-626H12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-95
0.028
0
6mer
1214-1237
0.003
1
RP11-923I11.4
hsa-miR-34a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567167
Biotype: lincRNA
Gene id: ENSG00000260473
Gene Name: RP11-923I11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-81
0.018
4
7mer
402-426
0.009
3
6mer
690-710
0.004
1
MYCNOS
hsa-miR-34a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419083
Biotype: antisense
Gene id: ENSG00000233718
Gene Name: MYCNOS
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
732-749
0.024
2
7mer
709-727
0.007
4
LOC388692
hsa-miR-34a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2379-2403
0.013
0
7mer
9879-9894
0.005
1
6mer
697-721
0.005
3
6mer
2508-2522
0.002
2
7mer
6009-6034
0.002
0
6mer
6821-6837
0.001
0
7mer
6910-6926
0.001
1
6mer
8456-8474
0.001
0
6mer
2397-2420
0.001
1
6mer
6946-6959
0.001
0
CTC-472C24.1
hsa-miR-34a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508636
Biotype: lincRNA
Gene id: ENSG00000249150
Gene Name: CTC-472C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
300-321
0.031
1
XLOC_009487
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019173
Biotype: transcript isomorph
Gene id: XLOC_009487
Gene Name: XLOC_009487
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-93
0.028
0
6mer
1212-1235
0.003
1
RP11-196O2.1
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000567497
Biotype: sense_overlapping
Gene id: ENSG00000261184
Gene Name: RP11-196O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-395
0.016
1
8mer
97-122
0.014
1
XLOC_009323
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3018-3036
0.024
2
6mer
3602-3629
0.004
1
6mer
1837-1864
0.001
1
6mer
1914-1938
0.001
3
6mer
1978-1997
0.000
0
XLOC_010930
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022332
Biotype: transcript isomorph
Gene id: XLOC_010930
Gene Name: XLOC_010930
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
846-869
0.024
1
6mer
157-177
0.003
1
6mer
388-400
0.002
0
6mer
446-469
0.002
1
RP11-385F5.5
hsa-miR-34a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608547
Biotype: antisense
Gene id: ENSG00000273058
Gene Name: RP11-385F5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
269-286
0.022
1
7mer
310-328
0.009
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept