LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-432J24.3
hsa-miR-34a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450206
Biotype: antisense
Gene id: ENSG00000234311
Gene Name: RP11-432J24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-116
0.017
1
8mer
67-85
0.007
0
6mer
787-807
0.004
1
6mer
445-462
0.003
1
AC093323.3
hsa-miR-34a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000444232
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-91
0.025
0
6mer
1928-1955
0.006
2
RP4-565E6.1
hsa-miR-34a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1499-1521
0.015
Not Conserved
7mer
1372-1386
0.007
3
6mer
585-595
0.004
2
6mer
2172-2187
0.003
1
6mer
943-964
0.002
0
RP11-383M4.2
hsa-miR-34a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427387
Biotype: lincRNA
Gene id: ENSG00000230846
Gene Name: RP11-383M4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-148
0.028
0
6mer
325-342
0.003
0
RP11-269F21.2
hsa-miR-34a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508010
Biotype: lincRNA
Gene id: ENSG00000248432
Gene Name: RP11-269F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-52
0.031
0
CTC-366B18.2
hsa-miR-34a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511329
Biotype: antisense
Gene id: ENSG00000248881
Gene Name: CTC-366B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-226
0.031
3
RP11-461L18.1
hsa-miR-34a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000561496
Biotype: lincRNA
Gene id: ENSG00000261382
Gene Name: RP11-461L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1420
0.025
1
7mer
196-217
0.006
1
RP11-381O7.3
hsa-miR-34a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000315293
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1503-1529
0.018
0
7mer
599-610
0.009
Not Conserved
7mer
2039-2065
0.002
Not Conserved
6mer
1969-1994
0.002
1
RP11-142C4.6
hsa-miR-34a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533954
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-65
0.023
1
6mer
2762-2781
0.004
1
6mer
1308-1324
0.001
0
6mer
1099-1112
0.001
0
6mer
982-1004
0.001
0
XLOC_013862
hsa-miR-34a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028792
Biotype: transcript isomorph
Gene id: XLOC_013862
Gene Name: XLOC_013862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-71
0.031
1
RP11-171I2.4
hsa-miR-34a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605334
Biotype: lincRNA
Gene id: ENSG00000271141
Gene Name: RP11-171I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-113
0.031
2
RP11-127O4.3
hsa-miR-34a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000447860
Biotype: lincRNA
Gene id: ENSG00000225768
Gene Name: RP11-127O4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
345-367
0.031
1
RP11-982M15.6
hsa-miR-34a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000540171
Biotype: lincRNA
Gene id: ENSG00000256050
Gene Name: RP11-982M15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-160
0.030
1
6mer
714-725
0.002
0
XLOC_010947
hsa-miR-34a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022643
Biotype: transcript isomorph
Gene id: XLOC_010947
Gene Name: XLOC_010947
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-175
0.019
1
6mer
2066-2092
0.004
0
6mer
605-619
0.002
0
6mer
2182-2201
0.002
Not Conserved
6mer
1659-1673
0.001
Not Conserved
6mer
1829-1843
0.001
Not Conserved
6mer
780-806
0.001
Not Conserved
6mer
1154-1180
0.001
Not Conserved
AC079586.1
hsa-miR-34a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2101-2124
0.019
2
6mer
1809-1834
0.005
2
6mer
2043-2056
0.004
0
6mer
1933-1950
0.003
0
RP11-876N24.5
hsa-miR-34a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570440
Biotype: sense_intronic
Gene id: ENSG00000263013
Gene Name: RP11-876N24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
875-897
0.026
0
6mer
1083-1103
0.003
0
6mer
165-179
0.002
2
HNF1A-AS1
hsa-miR-34a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539163
Biotype: retained_intron
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-383
0.016
1
7mer
2189-2205
0.015
1
RP11-344E13.3
hsa-miR-34a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000423473
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
784-807
0.031
1
XLOC_002643
hsa-miR-34a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005409
Biotype: transcript isomorph
Gene id: XLOC_002643
Gene Name: XLOC_002643
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3292-3317
0.022
4
6mer
402-417
0.002
2
6mer
2756-2782
0.002
1
6mer
2691-2709
0.002
1
6mer
2487-2505
0.001
1
6mer
847-860
0.001
0
AC079466.1
hsa-miR-34a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4394-4418
0.015
1
6mer
3421-3439
0.006
1
6mer
1485-1504
0.005
1
6mer
2716-2734
0.004
1
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