LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001849
hsa-miR-34a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003102
Biotype: transcript isomorph
Gene id: XLOC_001849
Gene Name: XLOC_001849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1444-1451
0.034
1
XLOC_006566
hsa-miR-34a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013929
Biotype: transcript isomorph
Gene id: XLOC_006566
Gene Name: XLOC_006566
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-27
0.029
1
6mer
451-465
0.005
0
LINC00272
hsa-miR-34a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612603
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-102
0.034
2
XLOC_006798
hsa-miR-34a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014700
Biotype: transcript isomorph
Gene id: XLOC_006798
Gene Name: XLOC_006798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-191
0.034
Not Conserved
RP11-511B23.2
hsa-miR-34a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550324
Biotype: antisense
Gene id: ENSG00000257322
Gene Name: RP11-511B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-278
0.034
5
RP11-23E19.1
hsa-miR-34a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568931
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-190
0.031
3
6mer
347-373
0.003
1
RP11-867G23.10
hsa-miR-34a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526186
Biotype: antisense
Gene id: ENSG00000254510
Gene Name: RP11-867G23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-159
0.030
0
6mer
131-144
0.004
0
RP11-305F18.1
hsa-miR-34a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445233
Biotype: lincRNA
Gene id: ENSG00000233928
Gene Name: RP11-305F18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-124
0.030
0
6mer
157-175
0.002
0
6mer
170-196
0.001
0
RP5-1070A16.1
hsa-miR-34a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418344
Biotype: lincRNA
Gene id: ENSG00000226053
Gene Name: RP5-1070A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-420
0.015
0
8mer
854-869
0.015
0
6mer
2129-2149
0.004
0
XLOC_008826
hsa-miR-34a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
82-97
0.009
0
7mer
3868-3884
0.008
0
6mer
4370-4393
0.007
0
6mer
3362-3385
0.004
0
6mer
2385-2404
0.003
1
6mer
1907-1933
0.002
0
RP5-1042K10.13
hsa-miR-34a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609279
Biotype: antisense
Gene id: ENSG00000272834
Gene Name: RP5-1042K10.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-64
0.028
1
6mer
112-137
0.005
1
RP5-858L17.1
hsa-miR-34a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620919
Biotype: antisense
Gene id: ENSG00000276649
Gene Name: RP5-858L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-215
0.022
1
6mer
412-431
0.005
6
6mer
290-315
0.004
4
6mer
429-446
0.002
1
RP11-299H22.6
hsa-miR-34a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561701
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-91
0.033
0
XLOC_003860
hsa-miR-34a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009011
Biotype: transcript isomorph
Gene id: XLOC_003860
Gene Name: XLOC_003860
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-95
0.014
Not Conserved
6mer
246-268
0.007
0
6mer
136-158
0.006
0
6mer
191-213
0.006
0
RP11-1103G16.1
hsa-miR-34a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550118
Biotype: antisense
Gene id: ENSG00000257636
Gene Name: RP11-1103G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
538-563
0.033
Not Conserved
XLOC_010966
hsa-miR-34a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022669
Biotype: transcript isomorph
Gene id: XLOC_010966
Gene Name: XLOC_010966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1565-1580
0.025
1
7mer
1667-1683
0.006
0
6mer
1323-1347
0.002
1
XLOC_007904
hsa-miR-34a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016518
Biotype: transcript isomorph
Gene id: XLOC_007904
Gene Name: XLOC_007904
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2245-2266
0.026
0
6mer
1541-1566
0.003
2
6mer
989-1013
0.002
2
6mer
709-731
0.001
0
6mer
874-895
0.001
0
XLOC_006126
hsa-miR-34a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
817-832
0.033
0
RP5-1065J22.8
hsa-miR-34a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608574
Biotype: antisense
Gene id: ENSG00000273382
Gene Name: RP5-1065J22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-239
0.012
1
7mer
1382-1398
0.008
1
6mer
264-279
0.003
1
7mer
810-835
0.003
0
6mer
2425-2441
0.003
1
6mer
498-518
0.003
1
6mer
747-763
0.002
0
RP11-996F15.2
hsa-miR-34a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612816
Biotype: antisense
Gene id: ENSG00000257176
Gene Name: RP11-996F15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-307
0.033
2
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