LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-92K15.1
hsa-miR-34a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522494
Biotype: antisense
Gene id: ENSG00000254205
Gene Name: RP11-92K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-328
0.034
0
XLOC_005165
hsa-miR-34a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011690
Biotype: transcript isomorph
Gene id: XLOC_005165
Gene Name: XLOC_005165
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-477
0.025
Not Conserved
7mer
561-583
0.009
Not Conserved
NOP14-AS1
hsa-miR-34a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512712
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.022
1
7mer
2539-2560
0.008
1
7mer
2621-2648
0.003
Not Conserved
6mer
2014-2033
0.001
1
RP11-397C12.1
hsa-miR-34a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424138
Biotype: antisense
Gene id: ENSG00000227466
Gene Name: RP11-397C12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.034
1
AC096669.3
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443205
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-382
0.021
1
6mer
1519-1534
0.007
1
7mer
74-93
0.006
0
XLOC_000782
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1743-1770
0.023
0
8mer+mismatch
1649-1667
0.011
0
LINC00523
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000360899
Biotype: lincRNA
Gene id: ENSG00000196273
Gene Name: LINC00523
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
606-629
0.029
1
6mer
157-177
0.003
1
6mer
388-400
0.002
0
MIR99AHG
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000619222
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2729-2749
0.033
2
6mer
1417-1438
0.001
2
RP11-93B14.4
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430184
Biotype: antisense
Gene id: ENSG00000223669
Gene Name: RP11-93B14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-608
0.026
Not Conserved
7mer
645-665
0.004
0
6mer
636-659
0.003
1
6mer
417-440
0.001
0
LINC01128
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000622921
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-595
0.034
1
RP11-381O7.3
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000598595
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1503-1529
0.026
0
7mer
599-610
0.008
Not Conserved
EMX2OS
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4708-4723
0.018
1
7mer
954-966
0.005
0
8mer
6444-6470
0.004
0
8mer
4881-4897
0.003
0
7mer
2598-2616
0.002
0
6mer
1630-1647
0.001
0
6mer
1406-1432
0.001
0
6mer
2498-2519
0.001
3
XLOC_000063
hsa-miR-34a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000848
Biotype: transcript isomorph
Gene id: XLOC_000063
Gene Name: XLOC_000063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
258-281
0.034
1
RP11-124K4.1
hsa-miR-34a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561572
Biotype: antisense
Gene id: ENSG00000260338
Gene Name: RP11-124K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-418
0.030
0
6mer
195-222
0.004
0
RP11-845C23.3
hsa-miR-34a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590318
Biotype: antisense
Gene id: ENSG00000267396
Gene Name: RP11-845C23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-269
0.022
1
7mer
153-174
0.012
1
RP11-23E19.1
hsa-miR-34a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563968
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
167-193
0.031
3
6mer
350-376
0.003
1
CTC-499B15.7
hsa-miR-34a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1797-1809
0.034
1
XLOC_013591
hsa-miR-34a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028248
Biotype: transcript isomorph
Gene id: XLOC_013591
Gene Name: XLOC_013591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-326
0.023
3
7mer
904-919
0.006
0
6mer
234-257
0.005
1
XLOC_005450
hsa-miR-34a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011940
Biotype: transcript isomorph
Gene id: XLOC_005450
Gene Name: XLOC_005450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-67
0.034
2
RNASEH1-AS1
hsa-miR-34a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438436
Biotype: antisense
Gene id: ENSG00000234171
Gene Name: RNASEH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1170-1194
0.034
1
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