LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP5-907D15.4
hsa-miR-34a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598340
Biotype: lincRNA
Gene id: ENSG00000268941
Gene Name: RP5-907D15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
711-734
0.030
1
6mer
128-151
0.002
0
6mer
172-194
0.002
0
DLGAP1-AS1
hsa-miR-34a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_024101.1
Biotype: antisense
Gene id: NR_024101.1 (gene)
Gene Name: DLGAP1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-652
0.035
1
RP11-673C5.2
hsa-miR-34a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562634
Biotype: antisense
Gene id: ENSG00000259964
Gene Name: RP11-673C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1970
0.023
5
6mer
1296-1311
0.004
3
8mer
678-701
0.004
1
6mer
951-972
0.001
1
6mer
823-848
0.001
1
6mer
942-953
0.001
2
RP11-571L19.8
hsa-miR-34a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609071
Biotype: lincRNA
Gene id: ENSG00000272777
Gene Name: RP11-571L19.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-128
0.030
2
6mer
591-607
0.004
3
RP11-273G15.2
hsa-miR-34a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517833
Biotype: lincRNA
Gene id: ENSG00000247317
Gene Name: RP11-273G15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-63
0.035
1
ARHGAP5-AS1
hsa-miR-34a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_027263.1
Biotype: antisense
Gene id: NR_027263.1 (gene)
Gene Name: ARHGAP5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-444
0.012
3
6mer
104-117
0.010
9
6mer
57-82
0.008
6
6mer
1136-1156
0.003
0
6mer
1128-1144
0.002
Not Conserved
RP11-95M5.1
hsa-miR-34a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566553
Biotype: lincRNA
Gene id: ENSG00000260902
Gene Name: RP11-95M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3526-3544
0.035
3
AC012668.2
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417485
Biotype: lincRNA
Gene id: ENSG00000237525
Gene Name: AC012668.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1032-1039
0.035
1
RP5-1071N3.1
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449034
Biotype: antisense
Gene id: ENSG00000231105
Gene Name: RP5-1071N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2230-2250
0.033
2
6mer
852-872
0.001
Not Conserved
RP11-115I9.1
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524269
Biotype: sense_intronic
Gene id: ENSG00000253681
Gene Name: RP11-115I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-148
0.035
1
RP11-54H7.4
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
539-565
0.028
0
7mer
605-627
0.004
Not Conserved
7mer
2545-2563
0.002
0
6mer
2348-2366
0.001
1
RP11-256I9.3
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562656
Biotype: lincRNA
Gene id: ENSG00000260364
Gene Name: RP11-256I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-295
0.032
2
6mer
100-123
0.002
0
CTD-3064H18.4
hsa-miR-34a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3049-3076
0.034
1
XLOC_004211
hsa-miR-34a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008697
Biotype: transcript isomorph
Gene id: XLOC_004211
Gene Name: XLOC_004211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-396
0.022
4
7mer
39-61
0.010
2
6mer
416-440
0.002
1
RP13-614K11.1
hsa-miR-34a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_040065.1
Biotype: lincRNA
Gene id: NR_040065.1 (gene)
Gene Name: RP13-614K11.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-528
0.034
1
RP11-456H18.2
hsa-miR-34a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437559
Biotype: lincRNA
Gene id: ENSG00000229896
Gene Name: RP11-456H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-52
0.034
1
RP11-86H7.7
hsa-miR-34a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435559
Biotype: lincRNA
Gene id: ENSG00000235565
Gene Name: RP11-86H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-581
0.025
5
6mer
1616-1629
0.003
1
6mer
1183-1206
0.002
2
6mer
2004-2028
0.002
1
6mer
928-954
0.001
1
6mer
1086-1111
0.001
2
RP11-381O7.3
hsa-miR-34a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000601096
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-573
0.034
0
SCEL-AS1
hsa-miR-34a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456280
Biotype: antisense
Gene id: ENSG00000224347
Gene Name: SCEL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-320
0.034
0
AC087501.1
hsa-miR-34a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000445617
Biotype: antisense
Gene id: ENSG00000225751
Gene Name: AC087501.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
157-178
0.034
1
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