LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
EMX2OS
hsa-miR-34a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4708-4723
0.019
1
7mer
954-966
0.005
0
8mer
6444-6470
0.004
0
8mer
4881-4897
0.003
0
7mer
2598-2616
0.002
0
6mer
1630-1647
0.001
0
6mer
1406-1432
0.001
0
6mer
2498-2519
0.001
3
RP11-331F9.3
hsa-miR-34a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457044
Biotype: antisense
Gene id: ENSG00000231393
Gene Name: RP11-331F9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-492
0.036
1
LCMT1-AS2
hsa-miR-34a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1536-1549
0.018
1
7mer
4161-4179
0.011
1
6mer
1739-1749
0.003
0
6mer
2519-2544
0.002
0
6mer
3532-3550
0.002
0
TNK2-AS1
hsa-miR-34a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458180
Biotype: antisense
Gene id: ENSG00000224614
Gene Name: TNK2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1589-1605
0.029
0
7mer
63-86
0.005
1
6mer
594-617
0.001
1
LINC01289
hsa-miR-34a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519550
Biotype: lincRNA
Gene id: ENSG00000253734
Gene Name: LINC01289
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3380-3396
0.026
2
8mer
1485-1507
0.010
1
RP1-93H18.7
hsa-miR-34a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606179
Biotype: lincRNA
Gene id: ENSG00000272403
Gene Name: RP1-93H18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-127
0.031
1
6mer
278-301
0.005
1
XLOC_006118
hsa-miR-34a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
561-583
0.018
Not Conserved
7mer
2609-2626
0.007
Not Conserved
7mer
1509-1535
0.005
Not Conserved
7mer
5060-5085
0.005
0
6mer
1919-1939
0.001
Not Conserved
RP11-311F12.1
hsa-miR-34a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577087
Biotype: lincRNA
Gene id: ENSG00000262681
Gene Name: RP11-311F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2473-2491
0.029
1
6mer
81-107
0.004
1
6mer
1854-1871
0.002
3
AC108448.3
hsa-miR-34a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000455154
Biotype: antisense
Gene id: ENSG00000234791
Gene Name: AC108448.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-44
0.028
1
7mer
174-195
0.008
Not Conserved
RP11-279F6.1
hsa-miR-34a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559029
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-138
0.035
1
SCEL-AS1
hsa-miR-34a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457528
Biotype: antisense
Gene id: ENSG00000224347
Gene Name: SCEL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-362
0.035
0
LINC00668
hsa-miR-34a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578278
Biotype: lincRNA
Gene id: ENSG00000265933
Gene Name: LINC00668
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-144
0.029
2
7mer
551-574
0.006
1
AC007128.1
hsa-miR-34a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-322
0.035
Not Conserved
CTD-2303H24.2
hsa-miR-34a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609578
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
670-689
0.018
0
9mer
7-31
0.017
Not Conserved
XLOC_010695
hsa-miR-34a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022087
Biotype: transcript isomorph
Gene id: XLOC_010695
Gene Name: XLOC_010695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-146
0.035
1
RP11-344E13.3
hsa-miR-34a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582583
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1515-1539
0.027
Not Conserved
8mer
1080-1101
0.008
0
CTB-92J24.3
hsa-miR-34a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596326
Biotype: antisense
Gene id: ENSG00000269289
Gene Name: CTB-92J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-362
0.025
1
7mer
723-742
0.010
0
YEATS2-AS1
hsa-miR-34a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425008
Biotype: antisense
Gene id: ENSG00000233885
Gene Name: YEATS2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2065-2086
0.017
7
7mer
185-202
0.015
0
6mer
149-172
0.003
1
LINC00272
hsa-miR-34a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367563
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-252
0.035
2
RP11-218I7.2
hsa-miR-34a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.035
1
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