LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010768
hsa-miR-34a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022925
Biotype: transcript isomorph
Gene id: XLOC_010768
Gene Name: XLOC_010768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-118
0.036
0
CTA-212A2.3
hsa-miR-34a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8475-8490
0.011
Not Conserved
8mer
12513-12529
0.008
0
8mer
7328-7351
0.008
1
7mer
5124-5142
0.003
1
7mer
890-906
0.002
0
6mer
5639-5662
0.001
1
6mer
4579-4602
0.001
1
6mer
9770-9797
0.001
0
AC006273.4
hsa-miR-34a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000606966
Biotype: lincRNA
Gene id: ENSG00000272473
Gene Name: AC006273.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-144
0.025
1
6mer
223-246
0.010
1
6mer
609-635
0.001
Not Conserved
XLOC_003146
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006523
Biotype: transcript isomorph
Gene id: XLOC_003146
Gene Name: XLOC_003146
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1416-1439
0.036
1
CADM3-AS1
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2059-2077
0.026
2
8mer
936-958
0.008
2
6mer
2383-2399
0.003
7
RP11-374M1.2
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
726-744
0.025
1
7mer
573-591
0.011
0
LA16c-380A1.1
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567096
Biotype: lincRNA
Gene id: ENSG00000259840
Gene Name: LA16c-380A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-175
0.036
1
RP11-216M21.7
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3044-3063
0.034
0
6mer
947-973
0.002
Not Conserved
LINC01504
hsa-miR-34a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451152
Biotype: lincRNA
Gene id: ENSG00000225434
Gene Name: LINC01504
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-378
0.021
5
7mer
322-342
0.015
5
RP11-381O7.3
hsa-miR-34a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000613489
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-179
0.036
0
RP11-93B14.6
hsa-miR-34a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370520
Biotype: antisense
Gene id: ENSG00000167046
Gene Name: RP11-93B14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-496
0.027
0
8mer
402-424
0.008
1
6mer
381-407
0.001
1
FENDRR
hsa-miR-34a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000595886
Biotype: lincRNA
Gene id: ENSG00000268388
Gene Name: FENDRR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-347
0.012
1
7mer
2275-2301
0.010
2
7mer
844-869
0.007
1
6mer
3039-3062
0.002
2
6mer
2506-2527
0.002
0
6mer
2695-2705
0.002
1
CTC-525D6.2
hsa-miR-34a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000579268
Biotype: antisense
Gene id: ENSG00000266248
Gene Name: CTC-525D6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-134
0.036
1
XLOC_008538
hsa-miR-34a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
710-726
0.021
0
7mer
609-624
0.010
0
6mer
804-821
0.005
2
RNASEH1-AS1
hsa-miR-34a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426725
Biotype: antisense
Gene id: ENSG00000234171
Gene Name: RNASEH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
802-826
0.036
1
AC084219.4
hsa-miR-34a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590369
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-112
0.020
0
8mer
133-157
0.016
0
XLOC_007033
hsa-miR-34a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014513
Biotype: transcript isomorph
Gene id: XLOC_007033
Gene Name: XLOC_007033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-358
0.030
1
6mer
281-307
0.003
1
6mer
4037-4060
0.002
0
6mer
2607-2625
0.001
1
RP11-168K11.3
hsa-miR-34a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1593-1617
0.025
0
8mer
1659-1686
0.008
1
6mer
1848-1874
0.003
2
LINC00700
hsa-miR-34a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413603
Biotype: lincRNA
Gene id: ENSG00000234962
Gene Name: LINC00700
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-85
0.023
1
7mer
285-308
0.013
0
RP11-464F9.21
hsa-miR-34a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607450
Biotype: antisense
Gene id: ENSG00000271848
Gene Name: RP11-464F9.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
246-265
0.033
0
6mer
140-160
0.003
5
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