LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
F11-AS1
hsa-miR-34a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508287
Biotype: antisense
Gene id: ENSG00000251165
Gene Name: F11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-511
0.032
1
6mer
120-139
0.006
1
XLOC_010052
hsa-miR-34a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020760
Biotype: transcript isomorph
Gene id: XLOC_010052
Gene Name: XLOC_010052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1631-1645
0.018
3
7mer
2070-2096
0.014
0
7mer
2432-2456
0.004
0
6mer
1554-1575
0.001
1
LINC01504
hsa-miR-34a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451596
Biotype: lincRNA
Gene id: ENSG00000225434
Gene Name: LINC01504
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-461
0.021
5
7mer
405-425
0.017
5
RP11-347E10.1
hsa-miR-34a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526605
Biotype: lincRNA
Gene id: ENSG00000254416
Gene Name: RP11-347E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-271
0.035
0
6mer
163-187
0.003
1
RP11-6N17.9
hsa-miR-34a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582262
Biotype: processed_transcript
Gene id: ENSG00000263798
Gene Name: RP11-6N17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-455
0.031
7
6mer
357-383
0.006
7
AC005609.16
hsa-miR-34a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624712
Biotype: antisense
Gene id: ENSG00000279726
Gene Name: AC005609.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1015
0.021
1
7mer
377-396
0.016
0
RP11-285J16.1
hsa-miR-34a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607744
Biotype: antisense
Gene id: ENSG00000271993
Gene Name: RP11-285J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-434
0.037
0
CTBP1-AS2
hsa-miR-34a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000581398
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5446-5461
0.012
0
7mer
2730-2748
0.010
1
6mer
5420-5431
0.007
1
7mer
2476-2490
0.005
1
6mer
635-648
0.002
0
6mer
1913-1939
0.001
Not Conserved
RP11-874J12.4
hsa-miR-34a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577848
Biotype: antisense
Gene id: ENSG00000266401
Gene Name: RP11-874J12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1155-1177
0.020
2
8mer
735-759
0.006
0
6mer
184-198
0.004
1
7mer
668-690
0.004
0
6mer
170-193
0.004
2
XLOC_006390
hsa-miR-34a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-649
0.029
9
7mer
3581-3606
0.003
1
6mer
4148-4162
0.002
2
6mer
943-965
0.002
4
6mer
853-876
0.001
1
7mer
2112-2132
0.001
2
RP11-374M1.2
hsa-miR-34a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-625
0.025
1
7mer
454-472
0.012
0
RP11-544A12.4
hsa-miR-34a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000587408
Biotype: antisense
Gene id: ENSG00000236986
Gene Name: RP11-544A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.037
3
RP11-253M7.1
hsa-miR-34a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560539
Biotype: antisense
Gene id: ENSG00000259426
Gene Name: RP11-253M7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-276
0.024
3
8mer
184-204
0.011
1
6mer
1524-1541
0.002
0
FAM230B
hsa-miR-34a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424410
Biotype: lincRNA
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-590
0.033
0
6mer
1052-1076
0.004
0
RP11-244H18.1
hsa-miR-34a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621705
Biotype: antisense
Gene id: ENSG00000276888
Gene Name: RP11-244H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1575-1597
0.028
2
6mer
288-308
0.004
1
6mer
711-731
0.003
0
6mer
795-817
0.001
0
RP11-76I14.1
hsa-miR-34a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000544869
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
54-72
0.025
1
6mer
31-44
0.005
6
6mer
360-383
0.004
1
6mer
313-338
0.002
0
RP11-359G22.2
hsa-miR-34a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441568
Biotype: lincRNA
Gene id: ENSG00000230400
Gene Name: RP11-359G22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1521-1547
0.027
1
8mer+mismatch
571-595
0.005
1
6mer
2030-2052
0.005
1
RP5-857K21.1
hsa-miR-34a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
593-612
0.015
0
6mer
725-743
0.009
0
6mer
177-197
0.009
0
6mer
657-675
0.003
Not Conserved
XLOC_011141
hsa-miR-34a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022887
Biotype: transcript isomorph
Gene id: XLOC_011141
Gene Name: XLOC_011141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-156
0.033
1
6mer
302-318
0.003
0
RP11-253M7.1
hsa-miR-34a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558617
Biotype: antisense
Gene id: ENSG00000259426
Gene Name: RP11-253M7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-276
0.024
3
8mer
184-204
0.011
1
6mer
1528-1545
0.002
0
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