LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007612
hsa-miR-34a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015778
Biotype: transcript isomorph
Gene id: XLOC_007612
Gene Name: XLOC_007612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-827
0.022
0
6mer
1937-1957
0.008
0
7mer
171-188
0.004
1
6mer
1486-1504
0.003
Not Conserved
6mer
641-665
0.002
0
6mer
1050-1073
0.001
1
ZNF561-AS1
hsa-miR-34a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1423-1446
0.013
Not Conserved
6mer
400-411
0.008
0
6mer
1387-1399
0.007
0
6mer
1338-1359
0.007
0
6mer
452-474
0.004
0
AC096669.3
hsa-miR-34a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439893
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-110
0.039
1
XIST
hsa-miR-34a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1386
0.024
3
7mer
3453-3469
0.007
3
7mer
13970-13997
0.002
0
6mer
7472-7498
0.002
2
6mer
6536-6546
0.001
1
6mer
12638-12662
0.001
0
6mer
12045-12064
0.001
0
6mer
11756-11779
0.001
0
XLOC_003067
hsa-miR-34a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006456
Biotype: transcript isomorph
Gene id: XLOC_003067
Gene Name: XLOC_003067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-224
0.029
1
6mer
111-129
0.004
1
6mer
19-46
0.003
0
6mer
194-213
0.002
0
RP11-408H20.3
hsa-miR-34a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582307
Biotype: antisense
Gene id: ENSG00000263698
Gene Name: RP11-408H20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-766
0.033
1
6mer
168-192
0.005
6
RP11-514P8.8
hsa-miR-34a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000481893
Biotype: processed_transcript
Gene id: ENSG00000272949
Gene Name: RP11-514P8.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-27
0.013
1
8mer
3009-3029
0.012
0
6mer
575-592
0.003
8
6mer
213-238
0.003
3
6mer
3115-3141
0.002
1
6mer
270-288
0.002
1
6mer
709-733
0.002
1
XLOC_007927
hsa-miR-34a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017138
Biotype: transcript isomorph
Gene id: XLOC_007927
Gene Name: XLOC_007927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-609
0.012
0
7mer
89-106
0.012
0
7mer
345-363
0.008
0
8mer+wobble
48-72
0.003
Not Conserved
6mer
544-560
0.002
Not Conserved
6mer
839-857
0.002
Not Conserved
AC100802.3
hsa-miR-34a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519197
Biotype: antisense
Gene id: ENSG00000253775
Gene Name: AC100802.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
756-770
0.030
0
7mer
188-208
0.006
1
6mer
840-854
0.002
0
XLOC_004761
hsa-miR-34a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010286
Biotype: transcript isomorph
Gene id: XLOC_004761
Gene Name: XLOC_004761
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-189
0.029
0
6mer
317-337
0.010
7
CTB-39G8.3
hsa-miR-34a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592389
Biotype: antisense
Gene id: ENSG00000267344
Gene Name: CTB-39G8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-384
0.038
4
XLOC_013333
hsa-miR-34a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027356
Biotype: transcript isomorph
Gene id: XLOC_013333
Gene Name: XLOC_013333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-458
0.029
1
6mer
685-707
0.004
1
6mer
2071-2093
0.004
1
AL450226.2
hsa-miR-34a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414776
Biotype: antisense
Gene id: ENSG00000225084
Gene Name: AL450226.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-488
0.038
6
AP000462.1
hsa-miR-34a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540545
Biotype: antisense
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-322
0.038
8
RP11-628E19.2
hsa-miR-34a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522918
Biotype: antisense
Gene id: ENSG00000254357
Gene Name: RP11-628E19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-427
0.038
1
RP11-1082L8.4
hsa-miR-34a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533516
Biotype: lincRNA
Gene id: ENSG00000255491
Gene Name: RP11-1082L8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-710
0.034
6
6mer
98-119
0.004
0
RP11-482H16.1
hsa-miR-34a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-509
0.038
5
C1QTNF1-AS1
hsa-miR-34a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581579
Biotype: antisense
Gene id: ENSG00000265096
Gene Name: C1QTNF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-627
0.038
5
C1QTNF1-AS1
hsa-miR-34a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577521
Biotype: antisense
Gene id: ENSG00000265096
Gene Name: C1QTNF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-291
0.038
5
RP11-168K9.2
hsa-miR-34a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1421-1439
0.024
2
6mer
317-341
0.005
3
6mer
2005-2032
0.004
1
6mer
240-267
0.003
1
6mer
381-400
0.002
0
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