LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
LINC00900
hsa-miR-34a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000514294
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
775-789
0.041
3
MYB-AS1
hsa-miR-34a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455534
Biotype: antisense
Gene id: ENSG00000236703
Gene Name: MYB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-194
0.041
1
MED4-AS1
hsa-miR-34a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422483
Biotype: antisense
Gene id: ENSG00000229111
Gene Name: MED4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-151
0.041
13
XLOC_006122
hsa-miR-34a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
454-470
0.029
0
6mer
626-650
0.012
1
XLOC_001053
hsa-miR-34a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001694
Biotype: transcript isomorph
Gene id: XLOC_001053
Gene Name: XLOC_001053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-744
0.033
2
6mer
395-419
0.004
2
6mer
570-597
0.004
1
AC011343.1
hsa-miR-34a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4589-4615
0.020
1
8mer
18-33
0.014
Not Conserved
6mer
667-691
0.006
7
6mer
4170-4186
0.001
1
LINC01000
hsa-miR-34a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9538-9556
0.034
0
6mer
562-587
0.002
1
6mer
4693-4718
0.001
1
6mer
893-908
0.001
0
6mer
1524-1546
0.001
Not Conserved
6mer
4071-4087
0.001
0
6mer
7407-7425
0.001
Not Conserved
6mer
4071-4092
0.000
0
RP5-997D16.2
hsa-miR-34a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429293
Biotype: antisense
Gene id: ENSG00000230163
Gene Name: RP5-997D16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-585
0.029
2
7mer
651-677
0.012
1
RP11-467D18.2
hsa-miR-34a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427046
Biotype: antisense
Gene id: ENSG00000237934
Gene Name: RP11-467D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-524
0.041
0
RP11-469H8.6
hsa-miR-34a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550214
Biotype: antisense
Gene id: ENSG00000257588
Gene Name: RP11-469H8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-55
0.038
1
6mer
689-716
0.002
0
XLOC_000648
hsa-miR-34a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001360
Biotype: transcript isomorph
Gene id: XLOC_000648
Gene Name: XLOC_000648
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1037-1050
0.035
1
6mer
229-243
0.006
0
XLOC_008668
hsa-miR-34a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018386
Biotype: transcript isomorph
Gene id: XLOC_008668
Gene Name: XLOC_008668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1512-1527
0.024
0
8mer
1268-1289
0.009
0
7mer
1001-1021
0.005
1
6mer
20-38
0.002
Not Conserved
AC007349.7
hsa-miR-34a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439998
Biotype: antisense
Gene id: ENSG00000230831
Gene Name: AC007349.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-121
0.040
1
XLOC_001607
hsa-miR-34a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003808
Biotype: transcript isomorph
Gene id: XLOC_001607
Gene Name: XLOC_001607
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-31
0.040
1
RP11-347E10.1
hsa-miR-34a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526703
Biotype: lincRNA
Gene id: ENSG00000254416
Gene Name: RP11-347E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-202
0.038
0
6mer
94-118
0.003
1
XLOC_002577
hsa-miR-34a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005946
Biotype: transcript isomorph
Gene id: XLOC_002577
Gene Name: XLOC_002577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-309
0.040
7
LINC00384
hsa-miR-34a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437721
Biotype: lincRNA
Gene id: ENSG00000232117
Gene Name: LINC00384
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6201-6223
0.034
1
6mer
4928-4955
0.002
1
6mer
5980-5996
0.002
0
6mer
2246-2263
0.001
2
6mer
2953-2967
0.001
2
RP3-470B24.5
hsa-miR-34a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000538528
Biotype: lincRNA
Gene id: ENSG00000235994
Gene Name: RP3-470B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-742
0.008
0
7mer
377-398
0.007
1
7mer
292-313
0.006
0
7mer
250-271
0.006
1
7mer
671-692
0.006
1
7mer
335-357
0.004
0
7mer
545-566
0.004
0
LINC00559
hsa-miR-34a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3609-3635
0.038
Not Conserved
6mer
1600-1617
0.001
0
6mer
2064-2089
0.001
1
RP11-96C23.10
hsa-miR-34a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451760
Biotype: antisense
Gene id: ENSG00000229969
Gene Name: RP11-96C23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
177-196
0.040
0
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