LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
AC007879.1
hsa-miR-34a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435643
Biotype: lincRNA
Gene id: ENSG00000224342
Gene Name: AC007879.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-375
0.042
1
IQCH-AS1
hsa-miR-34a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561232
Biotype: lincRNA
Gene id: ENSG00000259673
Gene Name: IQCH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-241
0.026
1
8mer
1172-1191
0.011
0
6mer
5442-5459
0.002
6
6mer
1353-1375
0.001
0
6mer
794-808
0.001
1
LINC00900
hsa-miR-34a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535683
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-336
0.042
3
RP11-320G24.1
hsa-miR-34a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452690
Biotype: lincRNA
Gene id: ENSG00000236393
Gene Name: RP11-320G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
452-471
0.036
4
6mer
919-943
0.003
3
7mer
517-537
0.003
0
AC011551.3
hsa-miR-34a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598743
Biotype: sense_intronic
Gene id: ENSG00000268423
Gene Name: AC011551.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-210
0.038
1
6mer
264-283
0.004
1
RP11-434D2.3
hsa-miR-34a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
776-796
0.019
0
7mer
3765-3790
0.010
0
7mer
1066-1087
0.004
0
7mer
1928-1950
0.003
0
6mer
3465-3482
0.002
0
6mer
60-82
0.002
Not Conserved
6mer
2063-2086
0.001
0
6mer
3497-3514
0.001
0
6mer
1942-1963
0.000
0
RP11-796E2.4
hsa-miR-34a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4086-4104
0.026
1
7mer
3049-3066
0.006
1
6mer
648-674
0.004
2
7mer
3353-3370
0.004
0
6mer
3902-3921
0.002
0
LINC01366
hsa-miR-34a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436248
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-412
0.024
0
8mer
754-777
0.014
0
6mer
237-254
0.004
3
XLOC_003264
hsa-miR-34a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006668
Biotype: transcript isomorph
Gene id: XLOC_003264
Gene Name: XLOC_003264
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-672
0.042
0
RP11-390P24.1
hsa-miR-34a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000615852
Biotype: lincRNA
Gene id: ENSG00000273576
Gene Name: RP11-390P24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-315
0.042
4
AC007009.1
hsa-miR-34a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458624
Biotype: antisense
Gene id: ENSG00000244239
Gene Name: AC007009.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-353
0.042
Not Conserved
CTD-2090I13.1
hsa-miR-34a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445817
Biotype: lincRNA
Gene id: ENSG00000234277
Gene Name: CTD-2090I13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1558
0.034
1
6mer
476-501
0.003
4
6mer
1858-1882
0.003
1
6mer
1424-1446
0.001
Not Conserved
AC006115.3
hsa-miR-34a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595954
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-395
0.026
2
7mer
598-612
0.012
0
6mer
171-189
0.004
3
RP11-161I6.2
hsa-miR-34a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582086
Biotype: lincRNA
Gene id: ENSG00000263745
Gene Name: RP11-161I6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-50
0.042
1
XLOC_011456
hsa-miR-34a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023655
Biotype: transcript isomorph
Gene id: XLOC_011456
Gene Name: XLOC_011456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-843
0.030
0
7mer
200-216
0.012
1
RP4-656G21.1
hsa-miR-34a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422638
Biotype: lincRNA
Gene id: ENSG00000228176
Gene Name: RP4-656G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-374
0.032
0
6mer
32-53
0.009
6
XLOC_007531
hsa-miR-34a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016139
Biotype: transcript isomorph
Gene id: XLOC_007531
Gene Name: XLOC_007531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.041
2
XLOC_000831
hsa-miR-34a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001491
Biotype: transcript isomorph
Gene id: XLOC_000831
Gene Name: XLOC_000831
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
853-872
0.021
1
7mer
796-821
0.020
3
RP11-364B6.1
hsa-miR-34a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418362
Biotype: lincRNA
Gene id: ENSG00000215869
Gene Name: RP11-364B6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
62-88
0.041
0
LINC01221
hsa-miR-34a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432488
Biotype: lincRNA
Gene id: ENSG00000235492
Gene Name: LINC01221
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-57
0.041
0
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