LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
LINC01366
hsa-miR-34a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518357
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-323
0.027
0
8mer
665-688
0.016
0
6mer
147-165
0.004
3
XLOC_003691
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008254
Biotype: transcript isomorph
Gene id: XLOC_003691
Gene Name: XLOC_003691
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-236
0.028
0
7mer
126-143
0.018
0
RP11-320G24.1
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000447570
Biotype: lincRNA
Gene id: ENSG00000236393
Gene Name: RP11-320G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
403-422
0.042
4
7mer
468-488
0.005
0
XLOC_000191
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-226
0.014
1
6mer
219-244
0.009
1
6mer
464-489
0.009
1
6mer
473-494
0.007
1
6mer
690-707
0.007
1
XLOC_007089
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7235-7260
0.008
Not Conserved
8mer
4614-4638
0.003
Not Conserved
6mer
8683-8702
0.003
0
6mer
9866-9886
0.003
0
6mer
2568-2595
0.003
0
6mer
4340-4357
0.002
0
6mer
9158-9183
0.002
0
6mer
7361-7384
0.002
0
6mer
9680-9703
0.002
0
6mer
6353-6379
0.002
0
6mer
6838-6864
0.002
0
6mer
4145-4171
0.001
0
6mer
10380-10397
0.001
Not Conserved
7mer
6265-6283
0.001
Not Conserved
6mer
6760-6785
0.001
0
6mer
4772-4791
0.001
0
6mer
10348-10371
0.001
0
6mer
9554-9573
0.001
Not Conserved
6mer
4107-4125
0.001
0
6mer
5701-5727
0.001
Not Conserved
6mer
6677-6694
0.001
0
8mer+mismatch
8594-8619
0.001
Not Conserved
6mer
4927-4951
0.001
Not Conserved
6mer
6553-6568
0.001
Not Conserved
6mer
6191-6217
0.001
Not Conserved
6mer
5570-5595
0.001
Not Conserved
6mer
4877-4897
0.000
Not Conserved
RP11-617F23.1
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558334
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-602
0.042
7
6mer
250-271
0.005
2
MGC45800
hsa-miR-34a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000315302
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-272
0.027
1
8mer
1840-1861
0.016
3
6mer
567-592
0.004
4
AC034220.3
hsa-miR-34a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000621103
Biotype: antisense
Gene id: ENSG00000233006
Gene Name: AC034220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
872-891
0.037
7
7mer
666-686
0.005
2
6mer
142-168
0.004
1
LINC01224
hsa-miR-34a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2479-2505
0.041
1
6mer
2626-2651
0.005
0
AF131215.3
hsa-miR-34a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526648
Biotype: sense_intronic
Gene id: ENSG00000254936
Gene Name: AF131215.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1713-1732
0.024
0
7mer
1344-1365
0.016
1
6mer
454-477
0.003
1
6mer
1027-1043
0.003
1
LINC00900
hsa-miR-34a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_034148.1
Biotype: lincRNA
Gene id: NR_034148.1 (gene)
Gene Name: LINC00900
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2059-2077
0.042
3
6mer
509-526
0.002
0
6mer
764-784
0.001
0
6mer
1254-1277
0.001
2
OR2A1-AS1
hsa-miR-34a-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000478925
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-232
0.046
4
XLOC_008963
hsa-miR-34a-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018616
Biotype: transcript isomorph
Gene id: XLOC_008963
Gene Name: XLOC_008963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-570
0.046
6
XLOC_012667
hsa-miR-34a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026327
Biotype: transcript isomorph
Gene id: XLOC_012667
Gene Name: XLOC_012667
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1909-1935
0.041
3
6mer
1791-1810
0.005
3
RP5-1198O20.4
hsa-miR-34a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-720
0.044
1
6mer
206-223
0.002
Not Conserved
LINC00938
hsa-miR-34a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3819-3836
0.032
3
8mer
5224-5240
0.009
1
6mer
1134-1152
0.002
1
6mer
4775-4793
0.002
1
FAM224B
hsa-miR-34a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000458667
Biotype: lincRNA
Gene id: ENSG00000230663
Gene Name: FAM224B
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1795-1807
0.044
0
6mer
1125-1148
0.002
Not Conserved
RP11-730K11.1
hsa-miR-34a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2857-2884
0.037
3
6mer
642-664
0.004
3
6mer
1820-1844
0.004
3
6mer
1802-1824
0.001
1
XLOC_009734
hsa-miR-34a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020407
Biotype: transcript isomorph
Gene id: XLOC_009734
Gene Name: XLOC_009734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
206-226
0.043
0
6mer
87-99
0.002
Not Conserved
RP11-768G7.2
hsa-miR-34a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496994
Biotype: lincRNA
Gene id: ENSG00000241213
Gene Name: RP11-768G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-136
0.045
6
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