LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
LOC101929657
hsa-miR-34a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_110306.1
Biotype: antisense
Gene id: NR_110306.1 (gene)
Gene Name: LOC101929657
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2891-2909
0.019
1
7mer
3109-3132
0.013
1
7mer
3145-3170
0.012
0
6mer
582-596
0.002
1
6mer
906-928
0.002
0
RP11-327F22.5
hsa-miR-34a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565327
Biotype: lincRNA
Gene id: ENSG00000261703
Gene Name: RP11-327F22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-177
0.048
2
LINC00879
hsa-miR-34a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466560
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-310
0.048
1
AC006960.7
hsa-miR-34a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435254
Biotype: antisense
Gene id: ENSG00000237400
Gene Name: AC006960.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-35
0.041
0
7mer
181-206
0.007
1
AP001442.2
hsa-miR-34a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456904
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-548
0.048
2
LINC01359
hsa-miR-34a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-166
0.044
2
6mer
2595-2612
0.004
0
XLOC_005569
hsa-miR-34a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012035
Biotype: transcript isomorph
Gene id: XLOC_005569
Gene Name: XLOC_005569
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-640
0.048
3
RP11-248G5.9
hsa-miR-34a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613982
Biotype: antisense
Gene id: ENSG00000273523
Gene Name: RP11-248G5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2895-2913
0.019
1
7mer
3113-3136
0.013
1
7mer
3149-3174
0.012
0
6mer
586-600
0.002
1
6mer
910-932
0.002
0
RP4-668E10.4
hsa-miR-34a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000614289
Biotype: lincRNA
Gene id: ENSG00000278254
Gene Name: RP4-668E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1195-1215
0.033
1
7mer
1092-1111
0.012
1
6mer
489-513
0.003
Not Conserved
AP001476.4
hsa-miR-34a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429512
Biotype: lincRNA
Gene id: ENSG00000228235
Gene Name: AP001476.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-188
0.015
0
7mer
214-236
0.009
Not Conserved
7mer
377-400
0.006
Not Conserved
7mer
344-367
0.006
Not Conserved
7mer
246-269
0.006
Not Conserved
7mer
311-334
0.005
Not Conserved
RP11-161I6.2
hsa-miR-34a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579097
Biotype: lincRNA
Gene id: ENSG00000263745
Gene Name: RP11-161I6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-194
0.047
1
AC009299.2
hsa-miR-34a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609940
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-457
0.047
7
RP11-25I15.3
hsa-miR-34a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550177
Biotype: lincRNA
Gene id: ENSG00000257114
Gene Name: RP11-25I15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
485-506
0.047
1
XLOC_002262
hsa-miR-34a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004377
Biotype: transcript isomorph
Gene id: XLOC_002262
Gene Name: XLOC_002262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-409
0.038
2
7mer
93-108
0.010
1
XLOC_009143
hsa-miR-34a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019908
Biotype: transcript isomorph
Gene id: XLOC_009143
Gene Name: XLOC_009143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-329
0.043
1
6mer
701-714
0.004
0
XLOC_012601
hsa-miR-34a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026226
Biotype: transcript isomorph
Gene id: XLOC_012601
Gene Name: XLOC_012601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
210-236
0.045
1
6mer
581-608
0.002
0
XLOC_007387
hsa-miR-34a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015553
Biotype: transcript isomorph
Gene id: XLOC_007387
Gene Name: XLOC_007387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-558
0.020
Not Conserved
7mer
15-35
0.018
1
7mer
1451-1462
0.008
Not Conserved
RP11-524H19.2
hsa-miR-34a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425089
Biotype: antisense
Gene id: ENSG00000224984
Gene Name: RP11-524H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-561
0.038
4
6mer
523-540
0.005
2
6mer
150-170
0.004
1
CTD-2311B13.5
hsa-miR-34a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-559
0.038
2
6mer
1826-1846
0.004
1
6mer
1403-1423
0.003
0
6mer
1317-1339
0.001
0
RP11-442N24__B.1
hsa-miR-34a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427804
Biotype: lincRNA
Gene id: ENSG00000229388
Gene Name: RP11-442N24__B.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
654-681
0.047
3
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