LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-432J22.2
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423793
Biotype: antisense
Gene id: ENSG00000238058
Gene Name: RP11-432J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-98
0.025
1
LINC00824
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523173
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-486
0.025
1
RP11-89G4.1
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000612967
Biotype: antisense
Gene id: ENSG00000277192
Gene Name: RP11-89G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-304
0.025
4
FER1L6-AS1
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518567
Biotype: antisense
Gene id: ENSG00000181171
Gene Name: FER1L6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-223
0.013
0
7mer
1031-1046
0.005
2
6mer
373-396
0.004
1
6mer
1495-1513
0.003
1
XLOC_001274
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000769
Biotype: transcript isomorph
Gene id: XLOC_001274
Gene Name: XLOC_001274
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-357
0.016
1
6mer
72-84
0.009
1
AC073934.6
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000490314
Biotype: antisense
Gene id: ENSG00000240790
Gene Name: AC073934.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-153
0.013
1
6mer
401-426
0.011
7
8mer+mismatch
350-370
0.001
0
LINC00342
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103734.1
Biotype: lincRNA
Gene id: NR_103734.1 (gene)
Gene Name: LINC00342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-274
0.020
1
6mer
1753-1769
0.003
0
6mer
1281-1295
0.003
0
RP11-23E19.1
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568931
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-234
0.025
4
XLOC_011031
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022751
Biotype: transcript isomorph
Gene id: XLOC_011031
Gene Name: XLOC_011031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-85
0.025
1
NPHP3-ACAD11
hsa-miR-345-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7374-7396
0.013
14
6mer
5210-5225
0.004
9
6mer
6475-6494
0.003
6
6mer
4901-4925
0.002
10
6mer
1021-1037
0.002
1
6mer
2462-2489
0.001
4
RP11-434D2.3
hsa-miR-345-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-175
0.015
0
7mer
169-188
0.006
0
7mer
2559-2580
0.001
0
6mer
1541-1561
0.001
0
7mer
2579-2591
0.001
0
PWRN1
hsa-miR-345-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568609
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-111
0.007
0
6mer
809-828
0.007
1
6mer
50-67
0.006
1
6mer
422-431
0.005
0
AC073254.1
hsa-miR-345-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617813
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
800-815
0.025
4
XLOC_012441
hsa-miR-345-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025609
Biotype: transcript isomorph
Gene id: XLOC_012441
Gene Name: XLOC_012441
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-361
0.016
2
7mer
326-345
0.009
2
KB-1254G8.1
hsa-miR-345-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519337
Biotype: lincRNA
Gene id: ENSG00000253385
Gene Name: KB-1254G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-674
0.025
1
LINC01424
hsa-miR-345-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000417820
Biotype: antisense
Gene id: ENSG00000236519
Gene Name: LINC01424
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
673-692
0.025
0
PPIEL
hsa-miR-345-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450157
Biotype: antisense
Gene id: ENSG00000182109
Gene Name: PPIEL
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-234
0.025
1
MIR503HG
hsa-miR-345-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440570
Biotype: lincRNA
Gene id: ENSG00000223749
Gene Name: MIR503HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-281
0.025
7
XLOC_009784
hsa-miR-345-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021153
Biotype: transcript isomorph
Gene id: XLOC_009784
Gene Name: XLOC_009784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-177
0.025
3
XLOC_008454
hsa-miR-345-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018162
Biotype: transcript isomorph
Gene id: XLOC_008454
Gene Name: XLOC_008454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-378
0.025
1
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