LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
LL22NC03-2H8.4
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-278
0.025
0
GLIDR
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_015363.1
Biotype: lincRNA
Gene id: NR_015363.1 (gene)
Gene Name: GLIDR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2494-2511
0.020
0
6mer
420-447
0.006
0
RP11-297C4.7
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613779
Biotype: lincRNA
Gene id: ENSG00000277237
Gene Name: RP11-297C4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-375
0.025
1
ENTPD1-AS1
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454638
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-454
0.019
0
6mer
2251-2274
0.003
1
6mer
1766-1782
0.002
0
6mer
1033-1059
0.002
1
RP11-211N8.2
hsa-miR-345-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450704
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-112
0.018
0
6mer
1417-1444
0.007
0
RP11-380L11.4
hsa-miR-345-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602952
Biotype: antisense
Gene id: ENSG00000270028
Gene Name: RP11-380L11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-416
0.016
3
7mer
347-365
0.009
1
AC010745.4
hsa-miR-345-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420130
Biotype: lincRNA
Gene id: ENSG00000232444
Gene Name: AC010745.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-553
0.022
3
6mer
219-232
0.003
1
AC009784.3
hsa-miR-345-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435996
Biotype: lincRNA
Gene id: ENSG00000232053
Gene Name: AC009784.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-212
0.025
1
STX16-NPEPL1
hsa-miR-345-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-545
0.017
8
6mer
9-31
0.005
6
6mer
3620-3647
0.002
0
6mer
1277-1297
0.001
1
LINC01519
hsa-miR-345-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454178
Biotype: lincRNA
Gene id: ENSG00000237267
Gene Name: LINC01519
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1500-1521
0.025
0
RP11-165F24.3
hsa-miR-345-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592805
Biotype: antisense
Gene id: ENSG00000227155
Gene Name: RP11-165F24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-72
0.025
2
RP11-780O24.2
hsa-miR-345-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531918
Biotype: antisense
Gene id: ENSG00000255523
Gene Name: RP11-780O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
282-297
0.013
0
6mer
443-462
0.012
0
RP11-445F12.1
hsa-miR-345-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612281
Biotype: antisense
Gene id: ENSG00000277268
Gene Name: RP11-445F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-45
0.025
0
RP11-23E19.1
hsa-miR-345-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563968
Biotype: antisense
Gene id: ENSG00000259833
Gene Name: RP11-23E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-237
0.025
4
RP11-1078H9.2
hsa-miR-345-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557622
Biotype: lincRNA
Gene id: ENSG00000258935
Gene Name: RP11-1078H9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-183
0.025
2
RP11-431M7.2
hsa-miR-345-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504344
Biotype: antisense
Gene id: ENSG00000251438
Gene Name: RP11-431M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-441
0.025
1
RP11-66A2.2
hsa-miR-345-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457698
Biotype: lincRNA
Gene id: ENSG00000236497
Gene Name: RP11-66A2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1463-1487
0.011
1
7mer
1830-1847
0.009
0
6mer
1603-1620
0.003
0
6mer
1801-1816
0.002
0
MUC19
hsa-miR-345-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
275-299
0.004
0
7mer
11726-11744
0.004
0
6mer
2920-2946
0.004
7
7mer
17535-17553
0.003
0
6mer
423-449
0.003
1
6mer
412-427
0.002
0
6mer
3159-3177
0.002
1
6mer
18072-18090
0.001
0
6mer
10041-10067
0.001
0
6mer
13485-13503
0.001
Not Conserved
6mer
10169-10187
0.001
0
XLOC_004467
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010037
Biotype: transcript isomorph
Gene id: XLOC_004467
Gene Name: XLOC_004467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
666-690
0.018
2
7mer
3012-3032
0.007
0
XLOC_011918
hsa-miR-345-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3487-3507
0.014
0
6mer
3847-3868
0.011
0
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