LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-348F1.2
hsa-miR-345-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000418775
Biotype: lincRNA
Gene id: ENSG00000226530
Gene Name: RP11-348F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-505
0.026
1
RP11-250B2.5
hsa-miR-345-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569267
Biotype: lincRNA
Gene id: ENSG00000260645
Gene Name: RP11-250B2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-66
0.026
0
XLOC_007349
hsa-miR-345-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015975
Biotype: transcript isomorph
Gene id: XLOC_007349
Gene Name: XLOC_007349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-41
0.026
1
TMEM51-AS1
hsa-miR-345-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-607
0.022
3
7mer
569-593
0.003
0
6mer
3372-3382
0.002
3
RP11-958F21.1
hsa-miR-345-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580984
Biotype: lincRNA
Gene id: ENSG00000264345
Gene Name: RP11-958F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-311
0.020
8
6mer
354-362
0.005
4
PSMD5-AS1
hsa-miR-345-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432640
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-689
0.013
1
6mer
106-129
0.007
4
6mer
447-470
0.004
3
6mer
522-546
0.002
4
ZRANB2-AS2
hsa-miR-345-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000586006
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-49
0.026
3
RP11-211N8.2
hsa-miR-345-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446626
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.019
0
6mer
2115-2142
0.007
0
RP11-568A7.3
hsa-miR-345-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454185
Biotype: lincRNA
Gene id: ENSG00000231720
Gene Name: RP11-568A7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-547
0.023
1
6mer
101-123
0.003
0
XLOC_007710
hsa-miR-345-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
187-214
0.018
0
6mer
825-835
0.008
0
XLOC_011525
hsa-miR-345-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023729
Biotype: transcript isomorph
Gene id: XLOC_011525
Gene Name: XLOC_011525
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-569
0.026
3
CTD-2308B18.2
hsa-miR-345-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510570
Biotype: lincRNA
Gene id: ENSG00000250438
Gene Name: CTD-2308B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-143
0.026
2
CTD-2215L10.1
hsa-miR-345-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506519
Biotype: antisense
Gene id: ENSG00000250619
Gene Name: CTD-2215L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
531-550
0.013
4
7mer
50-71
0.010
0
6mer
50-75
0.003
Not Conserved
AC010976.2
hsa-miR-345-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596439
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.026
1
RP11-91I20.1
hsa-miR-345-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000373384
Biotype: lincRNA
Gene id: ENSG00000255289
Gene Name: RP11-91I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-33
0.025
0
XLOC_012004
hsa-miR-345-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-166
0.018
9
6mer
2317-2336
0.007
10
MIR99AHG
hsa-miR-345-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602323
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
21-46
0.013
11
6mer
16-42
0.013
11
ZRANB2-AS2
hsa-miR-345-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430605
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-170
0.025
3
XLOC_011413
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023601
Biotype: transcript isomorph
Gene id: XLOC_011413
Gene Name: XLOC_011413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2177-2195
0.014
7
7mer
1646-1672
0.009
0
6mer
342-368
0.002
0
RP11-98D18.2
hsa-miR-345-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420382
Biotype: sense_intronic
Gene id: ENSG00000232937
Gene Name: RP11-98D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-408
0.025
0
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