LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
AC109589.1
hsa-miR-345-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422899
Biotype: lincRNA
Gene id: ENSG00000237035
Gene Name: AC109589.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-116
0.026
3
XLOC_008072
hsa-miR-345-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2896-2915
0.012
0
6mer
3859-3870
0.009
3
6mer
450-470
0.005
1
XLOC_007543
hsa-miR-345-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016147
Biotype: transcript isomorph
Gene id: XLOC_007543
Gene Name: XLOC_007543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1556-1576
0.016
2
9mer
700-718
0.007
1
7mer
737-754
0.002
Not Conserved
6mer
1132-1149
0.001
1
AP002954.3
hsa-miR-345-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530198
Biotype: antisense
Gene id: ENSG00000255176
Gene Name: AP002954.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-72
0.026
3
SOX2-OT
hsa-miR-345-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498731
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2780-2805
0.023
13
6mer
3067-3093
0.004
1
LINC00937
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539348
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-269
0.026
0
XLOC_012925
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026823
Biotype: transcript isomorph
Gene id: XLOC_012925
Gene Name: XLOC_012925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-148
0.017
1
7mer
367-381
0.009
1
RP11-21I10.2
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-877
0.015
0
7mer
94-99
0.012
0
RP11-744K17.1
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3724-3747
0.006
0
6mer
714-731
0.005
1
6mer
3490-3508
0.005
1
6mer
1295-1321
0.005
1
6mer
1453-1468
0.002
1
8mer
1470-1491
0.002
0
6mer
1337-1354
0.001
1
CTD-2506J14.1
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000499910
Biotype: lincRNA
Gene id: ENSG00000246084
Gene Name: CTD-2506J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-97
0.026
0
ZNF888
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596623
Biotype: lincRNA
Gene id: ENSG00000213793
Gene Name: ZNF888
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-353
0.026
3
XLOC_010106
hsa-miR-345-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020820
Biotype: transcript isomorph
Gene id: XLOC_010106
Gene Name: XLOC_010106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-480
0.017
3
6mer
30-45
0.007
1
6mer
1463-1474
0.001
Not Conserved
RP11-3J1.1
hsa-miR-345-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505347
Biotype: lincRNA
Gene id: ENSG00000248238
Gene Name: RP11-3J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-195
0.026
0
RP11-183I6.2
hsa-miR-345-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430640
Biotype: antisense
Gene id: ENSG00000231756
Gene Name: RP11-183I6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-49
0.026
2
RP11-69G7.1
hsa-miR-345-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560238
Biotype: lincRNA
Gene id: ENSG00000259672
Gene Name: RP11-69G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-619
0.017
1
7mer
609-625
0.009
1
RP5-912I13.1
hsa-miR-345-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000569431
Biotype: sense_overlapping
Gene id: ENSG00000260426
Gene Name: RP5-912I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1598-1621
0.023
1
6mer
1176-1196
0.002
1
RP11-893F2.14
hsa-miR-345-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572855
Biotype: antisense
Gene id: ENSG00000261959
Gene Name: RP11-893F2.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-779
0.017
4
8mer
1651-1668
0.009
0
ZRANB2-AS2
hsa-miR-345-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587066
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-42
0.026
3
RP11-650K20.2
hsa-miR-345-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549448
Biotype: antisense
Gene id: ENSG00000257754
Gene Name: RP11-650K20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-378
0.020
1
6mer
117-129
0.006
2
XLOC_007556
hsa-miR-345-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016692
Biotype: transcript isomorph
Gene id: XLOC_007556
Gene Name: XLOC_007556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-653
0.019
0
6mer
362-373
0.004
1
6mer
1489-1515
0.002
1
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