LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-367F23.2
hsa-miR-345-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563268
Biotype: lincRNA
Gene id: ENSG00000260454
Gene Name: RP11-367F23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1269-1288
0.014
1
7mer
674-686
0.008
1
6mer
893-916
0.005
1
XLOC_004192
hsa-miR-345-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-974
0.012
5
7mer
343-365
0.005
0
7mer
949-974
0.004
1
7mer
3562-3586
0.004
0
6mer
2765-2789
0.002
2
XLOC_007849
hsa-miR-345-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016477
Biotype: transcript isomorph
Gene id: XLOC_007849
Gene Name: XLOC_007849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-117
0.027
4
XLOC_013178
hsa-miR-345-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027142
Biotype: transcript isomorph
Gene id: XLOC_013178
Gene Name: XLOC_013178
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-275
0.027
1
ZRANB2-AS2
hsa-miR-345-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585499
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-38
0.027
3
ZRANB2-AS2
hsa-miR-345-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585415
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-38
0.027
3
XLOC_005909
hsa-miR-345-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011143
Biotype: transcript isomorph
Gene id: XLOC_005909
Gene Name: XLOC_005909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-636
0.018
0
8mer
1566-1589
0.003
0
6mer
3918-3935
0.002
2
6mer
2719-2745
0.001
1
6mer
3075-3098
0.001
1
6mer
2126-2145
0.001
0
AIRN
hsa-miR-345-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000609176
Biotype: antisense
Gene id: ENSG00000268257
Gene Name: AIRN
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1131-1155
0.011
2
7mer
414-431
0.006
0
6mer
900-909
0.004
0
8mer
475-498
0.003
0
6mer
1202-1229
0.003
Not Conserved
RP11-764K9.1
hsa-miR-345-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
187-214
0.019
0
6mer
825-835
0.008
0
XLOC_008506
hsa-miR-345-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017838
Biotype: transcript isomorph
Gene id: XLOC_008506
Gene Name: XLOC_008506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4289-4314
0.017
0
6mer
3871-3894
0.003
1
6mer
3644-3663
0.003
0
8mer+mismatch
315-334
0.002
1
7mer
2884-2904
0.001
Not Conserved
XLOC_005885
hsa-miR-345-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012337
Biotype: transcript isomorph
Gene id: XLOC_005885
Gene Name: XLOC_005885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-174
0.023
2
7mer
173-195
0.003
Not Conserved
XLOC_008828
hsa-miR-345-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018521
Biotype: transcript isomorph
Gene id: XLOC_008828
Gene Name: XLOC_008828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-82
0.027
1
MIR503HG
hsa-miR-345-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414769
Biotype: lincRNA
Gene id: ENSG00000223749
Gene Name: MIR503HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-175
0.027
7
LINC01085
hsa-miR-345-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502759
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1549-1570
0.022
1
6mer
1591-1607
0.004
1
XLOC_004964
hsa-miR-345-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010444
Biotype: transcript isomorph
Gene id: XLOC_004964
Gene Name: XLOC_004964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
947-962
0.024
1
6mer
709-726
0.002
0
AC004158.3
hsa-miR-345-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3685-3707
0.019
7
7mer
3250-3274
0.005
1
6mer
3514-3534
0.003
6
AC109589.1
hsa-miR-345-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448977
Biotype: lincRNA
Gene id: ENSG00000237035
Gene Name: AC109589.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-321
0.026
3
XLOC_013504
hsa-miR-345-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027921
Biotype: transcript isomorph
Gene id: XLOC_013504
Gene Name: XLOC_013504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-241
0.026
0
AP000479.1
hsa-miR-345-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532274
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1640-1658
0.019
0
7mer
1550-1573
0.007
1
RP11-958F21.1
hsa-miR-345-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582697
Biotype: lincRNA
Gene id: ENSG00000264345
Gene Name: RP11-958F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-227
0.021
8
6mer
270-278
0.005
4
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